Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Pcdha4O88689 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC21.32■■□□□ 1
Pcdha4O88689 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Pcdha4O88689 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC21.32■■□□□ 1
Pcdha4O88689 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
Pcdha4O88689 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Pcdha4O88689 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Pcdha4O88689 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Pcdha4O88689 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC21.31■■□□□ 1
Pcdha4O88689 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Pcdha4O88689 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Pcdha4O88689 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC21.31■■□□□ 1
Pcdha4O88689 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
Pcdha4O88689 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC21.31■■□□□ 1
Pcdha4O88689 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Pcdha4O88689 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC21.31■■□□□ 1
Pcdha4O88689 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Pcdha4O88689 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Pcdha4O88689 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Pcdha4O88689 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Pcdha4O88689 Gm5540-201ENSMUST00000131852 1848 ntBASIC21.3■■□□□ 1
Pcdha4O88689 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
Pcdha4O88689 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC21.3■■□□□ 1
Pcdha4O88689 Gm13534-201ENSMUST00000121169 513 ntBASIC21.3■■□□□ 1
Pcdha4O88689 AC124603.1-201ENSMUST00000223843 308 ntBASIC21.3■■□□□ 1
Pcdha4O88689 Ap3s1-204ENSMUST00000225520 957 ntBASIC21.3■■□□□ 1
Pcdha4O88689 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Pcdha4O88689 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Pcdha4O88689 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC21.3■■□□□ 1
Pcdha4O88689 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Pcdha4O88689 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC21.3■■□□□ 1
Pcdha4O88689 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Pcdha4O88689 Gm43545-201ENSMUST00000196765 2779 ntBASIC21.3■■□□□ 1
Pcdha4O88689 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Pcdha4O88689 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC21.29■■□□□ 1
Pcdha4O88689 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC21.29■■□□□ 1
Pcdha4O88689 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC21.29■■□□□ 1
Pcdha4O88689 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC21.29■■□□□ 1
Pcdha4O88689 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Pcdha4O88689 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC21.29■■□□□ 1
Pcdha4O88689 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Pcdha4O88689 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC21.28■■□□□ 1
Pcdha4O88689 Gm27405-201ENSMUST00000184201 112 ntBASIC21.28■■□□□ 1
Pcdha4O88689 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Pcdha4O88689 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC21.28■■□□□ 1
Pcdha4O88689 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Pcdha4O88689 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
Pcdha4O88689 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Pcdha4O88689 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Pcdha4O88689 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC21.27■■□□□ 1
Pcdha4O88689 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Pcdha4O88689 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC21.27■■□□□ 1
Pcdha4O88689 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
Pcdha4O88689 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC21.27■■□□□ 1
Pcdha4O88689 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Pcdha4O88689 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
Pcdha4O88689 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Pcdha4O88689 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Pcdha4O88689 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC21.26■□□□□ 0.99
Pcdha4O88689 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Pcdha4O88689 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC21.26■□□□□ 0.99
Pcdha4O88689 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Pcdha4O88689 Gm7514-201ENSMUST00000209475 934 ntBASIC21.26■□□□□ 0.99
Pcdha4O88689 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Pcdha4O88689 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC21.26■□□□□ 0.99
Pcdha4O88689 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Pcdha4O88689 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Pcdha4O88689 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC21.25■□□□□ 0.99
Pcdha4O88689 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC21.25■□□□□ 0.99
Pcdha4O88689 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Pcdha4O88689 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Pcdha4O88689 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Pcdha4O88689 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Pcdha4O88689 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Pcdha4O88689 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Pcdha4O88689 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Pcdha4O88689 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdha4O88689 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdha4O88689 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdha4O88689 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdha4O88689 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdha4O88689 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC21.24■□□□□ 0.99
Pcdha4O88689 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdha4O88689 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdha4O88689 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdha4O88689 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC21.24■□□□□ 0.99
Pcdha4O88689 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdha4O88689 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdha4O88689 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Pcdha4O88689 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Pcdha4O88689 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Pcdha4O88689 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Pcdha4O88689 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Pcdha4O88689 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Pcdha4O88689 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Pcdha4O88689 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Pcdha4O88689 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC21.23■□□□□ 0.99
Pcdha4O88689 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC21.23■□□□□ 0.99
Pcdha4O88689 Gm7291-201ENSMUST00000199147 382 ntBASIC21.23■□□□□ 0.99
Pcdha4O88689 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms