Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Prpf40aQ9R1C7 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Prpf40aQ9R1C7 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC20.97■□□□□ 0.95
Prpf40aQ9R1C7 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Prpf40aQ9R1C7 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Prpf40aQ9R1C7 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Prpf40aQ9R1C7 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC20.97■□□□□ 0.95
Prpf40aQ9R1C7 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC20.97■□□□□ 0.95
Prpf40aQ9R1C7 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Prpf40aQ9R1C7 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Prpf40aQ9R1C7 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Prpf40aQ9R1C7 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Prpf40aQ9R1C7 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Prpf40aQ9R1C7 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC20.97■□□□□ 0.95
Prpf40aQ9R1C7 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Prpf40aQ9R1C7 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Prpf40aQ9R1C7 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC20.96■□□□□ 0.95
Prpf40aQ9R1C7 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Prpf40aQ9R1C7 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Prpf40aQ9R1C7 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
Prpf40aQ9R1C7 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Prpf40aQ9R1C7 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC20.96■□□□□ 0.95
Prpf40aQ9R1C7 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Prpf40aQ9R1C7 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC20.96■□□□□ 0.95
Prpf40aQ9R1C7 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Prpf40aQ9R1C7 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Prpf40aQ9R1C7 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Prpf40aQ9R1C7 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Prpf40aQ9R1C7 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Prpf40aQ9R1C7 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Prpf40aQ9R1C7 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Prpf40aQ9R1C7 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Prpf40aQ9R1C7 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Prpf40aQ9R1C7 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC20.95■□□□□ 0.94
Prpf40aQ9R1C7 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Prpf40aQ9R1C7 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Prpf40aQ9R1C7 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Prpf40aQ9R1C7 Gm43060-201ENSMUST00000200621 289 ntBASIC20.95■□□□□ 0.94
Prpf40aQ9R1C7 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC20.95■□□□□ 0.94
Prpf40aQ9R1C7 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Prpf40aQ9R1C7 Gm42911-201ENSMUST00000199360 1630 ntBASIC20.95■□□□□ 0.94
Prpf40aQ9R1C7 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC20.95■□□□□ 0.94
Prpf40aQ9R1C7 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Prpf40aQ9R1C7 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Prpf40aQ9R1C7 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Prpf40aQ9R1C7 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC20.94■□□□□ 0.94
Prpf40aQ9R1C7 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Prpf40aQ9R1C7 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Prpf40aQ9R1C7 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Prpf40aQ9R1C7 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Prpf40aQ9R1C7 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Prpf40aQ9R1C7 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
Prpf40aQ9R1C7 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Prpf40aQ9R1C7 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Prpf40aQ9R1C7 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
Prpf40aQ9R1C7 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Prpf40aQ9R1C7 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Prpf40aQ9R1C7 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Prpf40aQ9R1C7 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Prpf40aQ9R1C7 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC20.92■□□□□ 0.94
Prpf40aQ9R1C7 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Prpf40aQ9R1C7 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Prpf40aQ9R1C7 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Prpf40aQ9R1C7 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Prpf40aQ9R1C7 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Prpf40aQ9R1C7 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Prpf40aQ9R1C7 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Prpf40aQ9R1C7 Gm40848-201ENSMUST00000221998 324 ntBASIC20.92■□□□□ 0.94
Prpf40aQ9R1C7 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Prpf40aQ9R1C7 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Prpf40aQ9R1C7 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Prpf40aQ9R1C7 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Prpf40aQ9R1C7 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Prpf40aQ9R1C7 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Prpf40aQ9R1C7 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Prpf40aQ9R1C7 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
Prpf40aQ9R1C7 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Prpf40aQ9R1C7 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Prpf40aQ9R1C7 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Prpf40aQ9R1C7 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC20.91■□□□□ 0.94
Prpf40aQ9R1C7 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Prpf40aQ9R1C7 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC20.91■□□□□ 0.94
Prpf40aQ9R1C7 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC20.91■□□□□ 0.94
Prpf40aQ9R1C7 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Prpf40aQ9R1C7 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Prpf40aQ9R1C7 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC20.91■□□□□ 0.94
Prpf40aQ9R1C7 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Prpf40aQ9R1C7 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Prpf40aQ9R1C7 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC20.9■□□□□ 0.94
Prpf40aQ9R1C7 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Prpf40aQ9R1C7 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Prpf40aQ9R1C7 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Prpf40aQ9R1C7 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Prpf40aQ9R1C7 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Prpf40aQ9R1C7 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Prpf40aQ9R1C7 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC20.9■□□□□ 0.94
Prpf40aQ9R1C7 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC20.9■□□□□ 0.94
Prpf40aQ9R1C7 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC20.9■□□□□ 0.94
Prpf40aQ9R1C7 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Prpf40aQ9R1C7 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC20.9■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 18.5 ms