Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp11Q99K46 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Usp11Q99K46 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Usp11Q99K46 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp11Q99K46 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp11Q99K46 Gm43173-201ENSMUST00000202246 593 ntBASIC20.07■□□□□ 0.8
Usp11Q99K46 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp11Q99K46 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp11Q99K46 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp11Q99K46 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Usp11Q99K46 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC20.06■□□□□ 0.8
Usp11Q99K46 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp11Q99K46 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp11Q99K46 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp11Q99K46 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Usp11Q99K46 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC20.06■□□□□ 0.8
Usp11Q99K46 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC20.06■□□□□ 0.8
Usp11Q99K46 Flvcr1-202ENSMUST00000191946 1216 ntBASIC20.06■□□□□ 0.8
Usp11Q99K46 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp11Q99K46 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC20.06■□□□□ 0.8
Usp11Q99K46 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp11Q99K46 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Usp11Q99K46 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp11Q99K46 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp11Q99K46 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp11Q99K46 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp11Q99K46 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC20.05■□□□□ 0.8
Usp11Q99K46 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Usp11Q99K46 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp11Q99K46 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp11Q99K46 Gm43909-201ENSMUST00000203443 1876 ntBASIC20.05■□□□□ 0.8
Usp11Q99K46 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp11Q99K46 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Usp11Q99K46 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Usp11Q99K46 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp11Q99K46 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp11Q99K46 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp11Q99K46 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp11Q99K46 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp11Q99K46 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp11Q99K46 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp11Q99K46 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp11Q99K46 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp11Q99K46 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC20.04■□□□□ 0.8
Usp11Q99K46 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp11Q99K46 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp11Q99K46 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp11Q99K46 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp11Q99K46 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Usp11Q99K46 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
Usp11Q99K46 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC20.03■□□□□ 0.8
Usp11Q99K46 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Usp11Q99K46 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC20.03■□□□□ 0.8
Usp11Q99K46 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp11Q99K46 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp11Q99K46 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp11Q99K46 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
Usp11Q99K46 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC20.02■□□□□ 0.8
Usp11Q99K46 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC20.02■□□□□ 0.8
Usp11Q99K46 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Usp11Q99K46 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC20.02■□□□□ 0.8
Usp11Q99K46 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp11Q99K46 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp11Q99K46 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC20.01■□□□□ 0.79
Usp11Q99K46 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp11Q99K46 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC20.01■□□□□ 0.79
Usp11Q99K46 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC20.01■□□□□ 0.79
Usp11Q99K46 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp11Q99K46 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC20.01■□□□□ 0.79
Usp11Q99K46 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp11Q99K46 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC20.01■□□□□ 0.79
Usp11Q99K46 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp11Q99K46 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp11Q99K46 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Usp11Q99K46 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Usp11Q99K46 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Usp11Q99K46 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Usp11Q99K46 Gm15039-201ENSMUST00000118914 875 ntBASIC20■□□□□ 0.79
Usp11Q99K46 Gm43017-201ENSMUST00000198296 752 ntBASIC20■□□□□ 0.79
Usp11Q99K46 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC20■□□□□ 0.79
Usp11Q99K46 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Usp11Q99K46 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Usp11Q99K46 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Usp11Q99K46 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC20■□□□□ 0.79
Usp11Q99K46 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC20■□□□□ 0.79
Usp11Q99K46 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Usp11Q99K46 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Usp11Q99K46 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp11Q99K46 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Usp11Q99K46 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp11Q99K46 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Usp11Q99K46 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp11Q99K46 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Usp11Q99K46 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp11Q99K46 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC19.99■□□□□ 0.79
Usp11Q99K46 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Usp11Q99K46 Serp2-204ENSMUST00000228055 705 ntBASIC19.99■□□□□ 0.79
Usp11Q99K46 Golph3-205ENSMUST00000228671 2842 ntBASIC19.99■□□□□ 0.79
Usp11Q99K46 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp11Q99K46 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC19.99■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 19.3 ms