Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
Syne4Q8CII8 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Syne4Q8CII8 Dio3-201ENSMUST00000097228 1449 ntBASIC21.79■■□□□ 1.08
Syne4Q8CII8 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Syne4Q8CII8 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Syne4Q8CII8 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
Syne4Q8CII8 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Syne4Q8CII8 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC21.78■■□□□ 1.08
Syne4Q8CII8 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Syne4Q8CII8 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Syne4Q8CII8 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
Syne4Q8CII8 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Syne4Q8CII8 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Syne4Q8CII8 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Syne4Q8CII8 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Syne4Q8CII8 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Syne4Q8CII8 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC21.78■■□□□ 1.08
Syne4Q8CII8 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Syne4Q8CII8 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC21.77■■□□□ 1.08
Syne4Q8CII8 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
Syne4Q8CII8 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Syne4Q8CII8 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Syne4Q8CII8 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
Syne4Q8CII8 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Syne4Q8CII8 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Syne4Q8CII8 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
Syne4Q8CII8 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Syne4Q8CII8 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
Syne4Q8CII8 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.07
Syne4Q8CII8 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
Syne4Q8CII8 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC21.76■■□□□ 1.07
Syne4Q8CII8 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
Syne4Q8CII8 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
Syne4Q8CII8 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Syne4Q8CII8 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Syne4Q8CII8 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC21.76■■□□□ 1.07
Syne4Q8CII8 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Syne4Q8CII8 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
Syne4Q8CII8 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Syne4Q8CII8 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Syne4Q8CII8 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Syne4Q8CII8 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Syne4Q8CII8 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Syne4Q8CII8 Gm715-201ENSMUST00000117865 831 ntBASIC21.75■■□□□ 1.07
Syne4Q8CII8 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Syne4Q8CII8 Gm26971-201ENSMUST00000182423 1072 ntBASIC21.75■■□□□ 1.07
Syne4Q8CII8 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC21.75■■□□□ 1.07
Syne4Q8CII8 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Syne4Q8CII8 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Syne4Q8CII8 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Syne4Q8CII8 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Syne4Q8CII8 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC21.74■■□□□ 1.07
Syne4Q8CII8 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Syne4Q8CII8 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Syne4Q8CII8 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Syne4Q8CII8 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Syne4Q8CII8 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC21.74■■□□□ 1.07
Syne4Q8CII8 Krtap5-1-202ENSMUST00000188274 742 ntBASIC21.74■■□□□ 1.07
Syne4Q8CII8 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC21.74■■□□□ 1.07
Syne4Q8CII8 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
Syne4Q8CII8 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
Syne4Q8CII8 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Syne4Q8CII8 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
Syne4Q8CII8 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Syne4Q8CII8 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Syne4Q8CII8 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Syne4Q8CII8 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Syne4Q8CII8 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Syne4Q8CII8 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC21.73■■□□□ 1.07
Syne4Q8CII8 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Syne4Q8CII8 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC21.73■■□□□ 1.07
Syne4Q8CII8 Gm29994-201ENSMUST00000195495 1193 ntBASIC21.73■■□□□ 1.07
Syne4Q8CII8 AC130671.1-201ENSMUST00000227384 1237 ntBASIC21.73■■□□□ 1.07
Syne4Q8CII8 AC154649.1-201ENSMUST00000227392 384 ntBASIC21.73■■□□□ 1.07
Syne4Q8CII8 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Syne4Q8CII8 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC21.73■■□□□ 1.07
Syne4Q8CII8 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Syne4Q8CII8 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Syne4Q8CII8 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Syne4Q8CII8 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
Syne4Q8CII8 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Syne4Q8CII8 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC21.72■■□□□ 1.07
Syne4Q8CII8 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Syne4Q8CII8 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Syne4Q8CII8 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Syne4Q8CII8 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC21.71■■□□□ 1.07
Syne4Q8CII8 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Syne4Q8CII8 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Syne4Q8CII8 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC21.71■■□□□ 1.07
Syne4Q8CII8 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
Syne4Q8CII8 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
Syne4Q8CII8 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC21.71■■□□□ 1.07
Syne4Q8CII8 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Syne4Q8CII8 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC21.71■■□□□ 1.07
Syne4Q8CII8 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
Syne4Q8CII8 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Syne4Q8CII8 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Syne4Q8CII8 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Syne4Q8CII8 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Syne4Q8CII8 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC21.7■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms