Protein–RNA interactions for Protein: Q8CDN8

Ccdc38, Coiled-coil domain-containing protein 38, mousemouse

Predictions only

Length 563 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc38Q8CDN8 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ccdc38Q8CDN8 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
Ccdc38Q8CDN8 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc38Q8CDN8 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc38Q8CDN8 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc38Q8CDN8 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC21.2■□□□□ 0.98
Ccdc38Q8CDN8 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc38Q8CDN8 Mir7075-201ENSMUST00000184187 82 ntBASIC21.2■□□□□ 0.98
Ccdc38Q8CDN8 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC21.2■□□□□ 0.98
Ccdc38Q8CDN8 Wdr70-203ENSMUST00000227371 1130 ntBASIC21.2■□□□□ 0.98
Ccdc38Q8CDN8 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc38Q8CDN8 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc38Q8CDN8 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc38Q8CDN8 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC21.2■□□□□ 0.98
Ccdc38Q8CDN8 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc38Q8CDN8 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc38Q8CDN8 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC21.2■□□□□ 0.98
Ccdc38Q8CDN8 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc38Q8CDN8 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC21.19■□□□□ 0.98
Ccdc38Q8CDN8 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc38Q8CDN8 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc38Q8CDN8 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc38Q8CDN8 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc38Q8CDN8 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc38Q8CDN8 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc38Q8CDN8 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc38Q8CDN8 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc38Q8CDN8 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc38Q8CDN8 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc38Q8CDN8 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc38Q8CDN8 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc38Q8CDN8 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Ccdc38Q8CDN8 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc38Q8CDN8 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc38Q8CDN8 Golph3-205ENSMUST00000228671 2842 ntBASIC21.18■□□□□ 0.98
Ccdc38Q8CDN8 Smad6-203ENSMUST00000179458 273 ntBASIC21.18■□□□□ 0.98
Ccdc38Q8CDN8 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC21.18■□□□□ 0.98
Ccdc38Q8CDN8 Gm5784-201ENSMUST00000179344 2478 ntBASIC21.18■□□□□ 0.98
Ccdc38Q8CDN8 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc38Q8CDN8 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc38Q8CDN8 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc38Q8CDN8 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc38Q8CDN8 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc38Q8CDN8 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc38Q8CDN8 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc38Q8CDN8 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc38Q8CDN8 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc38Q8CDN8 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc38Q8CDN8 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc38Q8CDN8 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC21.17■□□□□ 0.98
Ccdc38Q8CDN8 Gm43173-201ENSMUST00000202246 593 ntBASIC21.17■□□□□ 0.98
Ccdc38Q8CDN8 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc38Q8CDN8 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc38Q8CDN8 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc38Q8CDN8 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc38Q8CDN8 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc38Q8CDN8 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc38Q8CDN8 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc38Q8CDN8 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc38Q8CDN8 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc38Q8CDN8 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC21.16■□□□□ 0.98
Ccdc38Q8CDN8 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc38Q8CDN8 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC21.16■□□□□ 0.98
Ccdc38Q8CDN8 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc38Q8CDN8 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC21.16■□□□□ 0.98
Ccdc38Q8CDN8 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
Ccdc38Q8CDN8 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc38Q8CDN8 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc38Q8CDN8 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Ccdc38Q8CDN8 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Ccdc38Q8CDN8 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc38Q8CDN8 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC21.16■□□□□ 0.98
Ccdc38Q8CDN8 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc38Q8CDN8 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ccdc38Q8CDN8 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ccdc38Q8CDN8 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ccdc38Q8CDN8 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ccdc38Q8CDN8 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ccdc38Q8CDN8 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Ccdc38Q8CDN8 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ccdc38Q8CDN8 BC021767-201ENSMUST00000126387 1716 ntBASIC21.15■□□□□ 0.98
Ccdc38Q8CDN8 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ccdc38Q8CDN8 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
Ccdc38Q8CDN8 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
Ccdc38Q8CDN8 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ccdc38Q8CDN8 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ccdc38Q8CDN8 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ccdc38Q8CDN8 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
Ccdc38Q8CDN8 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
Ccdc38Q8CDN8 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ccdc38Q8CDN8 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
Ccdc38Q8CDN8 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC21.14■□□□□ 0.97
Ccdc38Q8CDN8 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
Ccdc38Q8CDN8 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Ccdc38Q8CDN8 Gm43231-201ENSMUST00000202960 2258 ntBASIC21.14■□□□□ 0.97
Ccdc38Q8CDN8 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ccdc38Q8CDN8 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ccdc38Q8CDN8 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Ccdc38Q8CDN8 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Ccdc38Q8CDN8 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 16.5 ms