Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
Trim56Q80VI1 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
Trim56Q80VI1 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
Trim56Q80VI1 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Trim56Q80VI1 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Trim56Q80VI1 Ap3s1-204ENSMUST00000225520 957 ntBASIC22.68■■□□□ 1.22
Trim56Q80VI1 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
Trim56Q80VI1 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Trim56Q80VI1 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
Trim56Q80VI1 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Trim56Q80VI1 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
Trim56Q80VI1 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Trim56Q80VI1 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC22.67■■□□□ 1.22
Trim56Q80VI1 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC22.67■■□□□ 1.22
Trim56Q80VI1 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
Trim56Q80VI1 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Trim56Q80VI1 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
Trim56Q80VI1 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
Trim56Q80VI1 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
Trim56Q80VI1 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Trim56Q80VI1 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
Trim56Q80VI1 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Trim56Q80VI1 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
Trim56Q80VI1 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
Trim56Q80VI1 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Trim56Q80VI1 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
Trim56Q80VI1 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
Trim56Q80VI1 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
Trim56Q80VI1 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
Trim56Q80VI1 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC22.65■■□□□ 1.22
Trim56Q80VI1 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
Trim56Q80VI1 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Trim56Q80VI1 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
Trim56Q80VI1 Gm27405-201ENSMUST00000184201 112 ntBASIC22.65■■□□□ 1.22
Trim56Q80VI1 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
Trim56Q80VI1 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Trim56Q80VI1 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.21
Trim56Q80VI1 Gm7291-201ENSMUST00000199147 382 ntBASIC22.64■■□□□ 1.21
Trim56Q80VI1 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC22.64■■□□□ 1.21
Trim56Q80VI1 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
Trim56Q80VI1 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC22.64■■□□□ 1.21
Trim56Q80VI1 AC164629.5-201ENSMUST00000220387 632 ntBASIC22.64■■□□□ 1.21
Trim56Q80VI1 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.21
Trim56Q80VI1 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Trim56Q80VI1 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Trim56Q80VI1 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Trim56Q80VI1 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC22.63■■□□□ 1.21
Trim56Q80VI1 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Trim56Q80VI1 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
Trim56Q80VI1 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
Trim56Q80VI1 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Trim56Q80VI1 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Trim56Q80VI1 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Trim56Q80VI1 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Trim56Q80VI1 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC22.63■■□□□ 1.21
Trim56Q80VI1 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Trim56Q80VI1 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
Trim56Q80VI1 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Trim56Q80VI1 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Trim56Q80VI1 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Trim56Q80VI1 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Trim56Q80VI1 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
Trim56Q80VI1 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Trim56Q80VI1 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Trim56Q80VI1 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
Trim56Q80VI1 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Trim56Q80VI1 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
Trim56Q80VI1 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Trim56Q80VI1 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Trim56Q80VI1 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Trim56Q80VI1 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Trim56Q80VI1 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC22.61■■□□□ 1.21
Trim56Q80VI1 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC22.61■■□□□ 1.21
Trim56Q80VI1 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Trim56Q80VI1 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC22.6■■□□□ 1.21
Trim56Q80VI1 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Trim56Q80VI1 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
Trim56Q80VI1 Gm13534-201ENSMUST00000121169 513 ntBASIC22.6■■□□□ 1.21
Trim56Q80VI1 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC22.6■■□□□ 1.21
Trim56Q80VI1 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Trim56Q80VI1 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC22.59■■□□□ 1.21
Trim56Q80VI1 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC22.59■■□□□ 1.21
Trim56Q80VI1 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Trim56Q80VI1 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Trim56Q80VI1 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
Trim56Q80VI1 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Trim56Q80VI1 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.21
Trim56Q80VI1 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Trim56Q80VI1 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Trim56Q80VI1 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC22.58■■□□□ 1.21
Trim56Q80VI1 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
Trim56Q80VI1 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC22.58■■□□□ 1.21
Trim56Q80VI1 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.21
Trim56Q80VI1 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Trim56Q80VI1 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC22.58■■□□□ 1.21
Trim56Q80VI1 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Trim56Q80VI1 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
Trim56Q80VI1 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Trim56Q80VI1 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
Trim56Q80VI1 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC22.57■■□□□ 1.2
Retrieved 100 of 76,532 protein–RNA pairs in 18 ms