Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Upf3aQ3ULJ3 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Upf3aQ3ULJ3 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Upf3aQ3ULJ3 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Upf3aQ3ULJ3 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Upf3aQ3ULJ3 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
Upf3aQ3ULJ3 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC20.23■□□□□ 0.83
Upf3aQ3ULJ3 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC20.23■□□□□ 0.83
Upf3aQ3ULJ3 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC20.23■□□□□ 0.83
Upf3aQ3ULJ3 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Upf3aQ3ULJ3 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
Upf3aQ3ULJ3 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Upf3aQ3ULJ3 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Upf3aQ3ULJ3 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Upf3aQ3ULJ3 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Upf3aQ3ULJ3 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC20.22■□□□□ 0.83
Upf3aQ3ULJ3 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Upf3aQ3ULJ3 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Upf3aQ3ULJ3 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Upf3aQ3ULJ3 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Upf3aQ3ULJ3 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Upf3aQ3ULJ3 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Upf3aQ3ULJ3 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Upf3aQ3ULJ3 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Upf3aQ3ULJ3 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Upf3aQ3ULJ3 Gm13042-201ENSMUST00000119244 1955 ntBASIC20.21■□□□□ 0.83
Upf3aQ3ULJ3 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Upf3aQ3ULJ3 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
Upf3aQ3ULJ3 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC20.21■□□□□ 0.83
Upf3aQ3ULJ3 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC20.21■□□□□ 0.83
Upf3aQ3ULJ3 Gm44878-201ENSMUST00000205812 1295 ntBASIC20.21■□□□□ 0.83
Upf3aQ3ULJ3 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC20.21■□□□□ 0.83
Upf3aQ3ULJ3 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Upf3aQ3ULJ3 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Upf3aQ3ULJ3 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Upf3aQ3ULJ3 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Upf3aQ3ULJ3 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC20.21■□□□□ 0.83
Upf3aQ3ULJ3 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Upf3aQ3ULJ3 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Upf3aQ3ULJ3 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Upf3aQ3ULJ3 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
Upf3aQ3ULJ3 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Upf3aQ3ULJ3 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Upf3aQ3ULJ3 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Upf3aQ3ULJ3 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC20.2■□□□□ 0.82
Upf3aQ3ULJ3 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Upf3aQ3ULJ3 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Upf3aQ3ULJ3 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Upf3aQ3ULJ3 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Upf3aQ3ULJ3 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Upf3aQ3ULJ3 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Upf3aQ3ULJ3 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Upf3aQ3ULJ3 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Upf3aQ3ULJ3 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Upf3aQ3ULJ3 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Upf3aQ3ULJ3 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Upf3aQ3ULJ3 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Upf3aQ3ULJ3 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Upf3aQ3ULJ3 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Upf3aQ3ULJ3 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Upf3aQ3ULJ3 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Upf3aQ3ULJ3 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Upf3aQ3ULJ3 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Upf3aQ3ULJ3 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Upf3aQ3ULJ3 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Upf3aQ3ULJ3 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC20.18■□□□□ 0.82
Upf3aQ3ULJ3 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Upf3aQ3ULJ3 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC20.18■□□□□ 0.82
Upf3aQ3ULJ3 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Upf3aQ3ULJ3 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Upf3aQ3ULJ3 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Upf3aQ3ULJ3 Gm13509-201ENSMUST00000119733 1308 ntBASIC20.18■□□□□ 0.82
Upf3aQ3ULJ3 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Upf3aQ3ULJ3 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Upf3aQ3ULJ3 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC20.17■□□□□ 0.82
Upf3aQ3ULJ3 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Upf3aQ3ULJ3 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Upf3aQ3ULJ3 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Upf3aQ3ULJ3 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Upf3aQ3ULJ3 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Upf3aQ3ULJ3 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Upf3aQ3ULJ3 Gm10812-201ENSMUST00000099864 546 ntBASIC20.16■□□□□ 0.82
Upf3aQ3ULJ3 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Upf3aQ3ULJ3 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Upf3aQ3ULJ3 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Upf3aQ3ULJ3 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC20.16■□□□□ 0.82
Upf3aQ3ULJ3 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Upf3aQ3ULJ3 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Upf3aQ3ULJ3 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Upf3aQ3ULJ3 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC20.15■□□□□ 0.82
Upf3aQ3ULJ3 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Upf3aQ3ULJ3 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Upf3aQ3ULJ3 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Upf3aQ3ULJ3 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Upf3aQ3ULJ3 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC20.15■□□□□ 0.82
Upf3aQ3ULJ3 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Upf3aQ3ULJ3 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.82
Upf3aQ3ULJ3 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC20.14■□□□□ 0.81
Upf3aQ3ULJ3 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Upf3aQ3ULJ3 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 44.4 ms