Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col5a1O88207 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Col5a1O88207 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col5a1O88207 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC17.48■□□□□ 0.39
Col5a1O88207 Gm44672-201ENSMUST00000206944 1098 ntBASIC17.48■□□□□ 0.39
Col5a1O88207 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Col5a1O88207 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC17.48■□□□□ 0.39
Col5a1O88207 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Col5a1O88207 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col5a1O88207 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col5a1O88207 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC17.48■□□□□ 0.39
Col5a1O88207 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Col5a1O88207 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col5a1O88207 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col5a1O88207 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC17.47■□□□□ 0.39
Col5a1O88207 Gm6576-201ENSMUST00000169678 883 ntBASIC17.47■□□□□ 0.39
Col5a1O88207 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col5a1O88207 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col5a1O88207 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col5a1O88207 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col5a1O88207 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col5a1O88207 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col5a1O88207 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Col5a1O88207 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col5a1O88207 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
Col5a1O88207 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col5a1O88207 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC17.47■□□□□ 0.39
Col5a1O88207 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Col5a1O88207 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col5a1O88207 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col5a1O88207 Gm11643-201ENSMUST00000119578 864 ntBASIC17.47■□□□□ 0.39
Col5a1O88207 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col5a1O88207 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col5a1O88207 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col5a1O88207 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col5a1O88207 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col5a1O88207 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col5a1O88207 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col5a1O88207 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Col5a1O88207 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col5a1O88207 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC17.46■□□□□ 0.39
Col5a1O88207 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col5a1O88207 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col5a1O88207 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC17.46■□□□□ 0.39
Col5a1O88207 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Col5a1O88207 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Col5a1O88207 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Col5a1O88207 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col5a1O88207 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col5a1O88207 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col5a1O88207 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
Col5a1O88207 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col5a1O88207 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC17.44■□□□□ 0.38
Col5a1O88207 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Col5a1O88207 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
Col5a1O88207 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col5a1O88207 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col5a1O88207 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col5a1O88207 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC17.44■□□□□ 0.38
Col5a1O88207 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col5a1O88207 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Col5a1O88207 Gm6802-201ENSMUST00000167843 1983 ntBASIC17.44■□□□□ 0.38
Col5a1O88207 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Col5a1O88207 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC17.43■□□□□ 0.38
Col5a1O88207 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col5a1O88207 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col5a1O88207 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col5a1O88207 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC17.43■□□□□ 0.38
Col5a1O88207 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Col5a1O88207 Arhgef33-211ENSMUST00000225658 473 ntBASIC17.43■□□□□ 0.38
Col5a1O88207 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col5a1O88207 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col5a1O88207 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Col5a1O88207 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col5a1O88207 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC17.43■□□□□ 0.38
Col5a1O88207 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC17.43■□□□□ 0.38
Col5a1O88207 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
Col5a1O88207 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Col5a1O88207 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col5a1O88207 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col5a1O88207 Gm27032-201ENSMUST00000183124 1116 ntBASIC17.42■□□□□ 0.38
Col5a1O88207 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col5a1O88207 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col5a1O88207 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Col5a1O88207 Gm10819-201ENSMUST00000099988 561 ntBASIC17.42■□□□□ 0.38
Col5a1O88207 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Col5a1O88207 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Col5a1O88207 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
Col5a1O88207 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col5a1O88207 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col5a1O88207 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col5a1O88207 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
Col5a1O88207 Gm37055-201ENSMUST00000191866 133 ntBASIC17.42■□□□□ 0.38
Col5a1O88207 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Col5a1O88207 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col5a1O88207 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Col5a1O88207 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Col5a1O88207 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col5a1O88207 AL672049.1-201ENSMUST00000197943 91 ntBASIC17.41■□□□□ 0.38
Col5a1O88207 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms