Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
Chd3B1AR17 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC18.81■□□□□ 0.6
Chd3B1AR17 Gm4968-201ENSMUST00000071458 858 ntBASIC18.81■□□□□ 0.6
Chd3B1AR17 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chd3B1AR17 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chd3B1AR17 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chd3B1AR17 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Chd3B1AR17 Gm12441-201ENSMUST00000121806 588 ntBASIC18.8■□□□□ 0.6
Chd3B1AR17 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC18.8■□□□□ 0.6
Chd3B1AR17 Mir5133-201ENSMUST00000174955 77 ntBASIC18.8■□□□□ 0.6
Chd3B1AR17 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Chd3B1AR17 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC18.8■□□□□ 0.6
Chd3B1AR17 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC18.8■□□□□ 0.6
Chd3B1AR17 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Chd3B1AR17 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Chd3B1AR17 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Chd3B1AR17 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chd3B1AR17 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chd3B1AR17 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chd3B1AR17 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chd3B1AR17 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Chd3B1AR17 Gm42555-201ENSMUST00000199304 1039 ntBASIC18.79■□□□□ 0.6
Chd3B1AR17 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC18.79■□□□□ 0.6
Chd3B1AR17 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC18.79■□□□□ 0.6
Chd3B1AR17 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chd3B1AR17 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chd3B1AR17 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Chd3B1AR17 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
Chd3B1AR17 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Chd3B1AR17 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Chd3B1AR17 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Chd3B1AR17 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Chd3B1AR17 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Chd3B1AR17 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC18.78■□□□□ 0.6
Chd3B1AR17 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Chd3B1AR17 Gm27011-201ENSMUST00000182352 972 ntBASIC18.78■□□□□ 0.6
Chd3B1AR17 Gm26524-201ENSMUST00000192339 390 ntBASIC18.78■□□□□ 0.6
Chd3B1AR17 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
Chd3B1AR17 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Chd3B1AR17 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC18.77■□□□□ 0.6
Chd3B1AR17 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Chd3B1AR17 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Chd3B1AR17 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Chd3B1AR17 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Chd3B1AR17 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Chd3B1AR17 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Chd3B1AR17 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Chd3B1AR17 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC18.77■□□□□ 0.6
Chd3B1AR17 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Chd3B1AR17 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Chd3B1AR17 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Chd3B1AR17 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Chd3B1AR17 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Chd3B1AR17 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC18.76■□□□□ 0.59
Chd3B1AR17 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
Chd3B1AR17 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Chd3B1AR17 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
Chd3B1AR17 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Chd3B1AR17 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Chd3B1AR17 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Chd3B1AR17 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chd3B1AR17 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Chd3B1AR17 Gm12669-201ENSMUST00000122162 1009 ntBASIC18.75■□□□□ 0.59
Chd3B1AR17 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chd3B1AR17 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chd3B1AR17 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chd3B1AR17 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chd3B1AR17 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Chd3B1AR17 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chd3B1AR17 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chd3B1AR17 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chd3B1AR17 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chd3B1AR17 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chd3B1AR17 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chd3B1AR17 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC18.75■□□□□ 0.59
Chd3B1AR17 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chd3B1AR17 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chd3B1AR17 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chd3B1AR17 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Chd3B1AR17 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chd3B1AR17 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Chd3B1AR17 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Chd3B1AR17 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chd3B1AR17 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Chd3B1AR17 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chd3B1AR17 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chd3B1AR17 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chd3B1AR17 Gm10602-201ENSMUST00000098239 609 ntBASIC18.73■□□□□ 0.59
Chd3B1AR17 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chd3B1AR17 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Chd3B1AR17 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chd3B1AR17 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chd3B1AR17 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Chd3B1AR17 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chd3B1AR17 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Chd3B1AR17 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Chd3B1AR17 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Chd3B1AR17 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Chd3B1AR17 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Chd3B1AR17 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 18.5 ms