Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC27.69■■■□□ 2.02
Prpf40aQ9R1C7 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
Prpf40aQ9R1C7 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
Prpf40aQ9R1C7 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
Prpf40aQ9R1C7 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
Prpf40aQ9R1C7 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC27.66■■■□□ 2.02
Prpf40aQ9R1C7 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
Prpf40aQ9R1C7 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
Prpf40aQ9R1C7 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC27.65■■■□□ 2.02
Prpf40aQ9R1C7 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
Prpf40aQ9R1C7 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC27.64■■■□□ 2.02
Prpf40aQ9R1C7 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
Prpf40aQ9R1C7 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
Prpf40aQ9R1C7 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
Prpf40aQ9R1C7 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
Prpf40aQ9R1C7 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC27.6■■■□□ 2.01
Prpf40aQ9R1C7 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC27.59■■■□□ 2.01
Prpf40aQ9R1C7 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
Prpf40aQ9R1C7 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC27.58■■■□□ 2.01
Prpf40aQ9R1C7 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
Prpf40aQ9R1C7 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC27.57■■■□□ 2
Prpf40aQ9R1C7 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
Prpf40aQ9R1C7 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC27.55■■■□□ 2
Prpf40aQ9R1C7 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC27.55■■■□□ 2
Prpf40aQ9R1C7 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
Prpf40aQ9R1C7 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
Prpf40aQ9R1C7 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC27.53■■■□□ 2
Prpf40aQ9R1C7 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC27.53■■■□□ 2
Prpf40aQ9R1C7 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Prpf40aQ9R1C7 Gm6206-201ENSMUST00000133472 2199 ntBASIC27.51■■□□□ 1.99
Prpf40aQ9R1C7 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
Prpf40aQ9R1C7 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC27.5■■□□□ 1.99
Prpf40aQ9R1C7 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC27.5■■□□□ 1.99
Prpf40aQ9R1C7 Gm9905-201ENSMUST00000065740 1845 ntBASIC27.5■■□□□ 1.99
Prpf40aQ9R1C7 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC27.49■■□□□ 1.99
Prpf40aQ9R1C7 Zxda-201ENSMUST00000117281 2621 ntBASIC27.49■■□□□ 1.99
Prpf40aQ9R1C7 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC27.49■■□□□ 1.99
Prpf40aQ9R1C7 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
Prpf40aQ9R1C7 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC27.48■■□□□ 1.99
Prpf40aQ9R1C7 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
Prpf40aQ9R1C7 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC27.48■■□□□ 1.99
Prpf40aQ9R1C7 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
Prpf40aQ9R1C7 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC27.44■■□□□ 1.98
Prpf40aQ9R1C7 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC27.43■■□□□ 1.98
Prpf40aQ9R1C7 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC27.42■■□□□ 1.98
Prpf40aQ9R1C7 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC27.4■■□□□ 1.98
Prpf40aQ9R1C7 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC27.39■■□□□ 1.98
Prpf40aQ9R1C7 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC27.39■■□□□ 1.98
Prpf40aQ9R1C7 Zfp131-205ENSMUST00000223812 663 ntBASIC27.39■■□□□ 1.98
Prpf40aQ9R1C7 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC27.39■■□□□ 1.98
Prpf40aQ9R1C7 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
Prpf40aQ9R1C7 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
Prpf40aQ9R1C7 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC27.37■■□□□ 1.97
Prpf40aQ9R1C7 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
Prpf40aQ9R1C7 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC27.36■■□□□ 1.97
Prpf40aQ9R1C7 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC27.36■■□□□ 1.97
Prpf40aQ9R1C7 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC27.36■■□□□ 1.97
Prpf40aQ9R1C7 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
Prpf40aQ9R1C7 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
Prpf40aQ9R1C7 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
Prpf40aQ9R1C7 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC27.33■■□□□ 1.97
Prpf40aQ9R1C7 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC27.33■■□□□ 1.97
Prpf40aQ9R1C7 Gm43445-201ENSMUST00000198564 2091 ntBASIC27.32■■□□□ 1.96
Prpf40aQ9R1C7 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Prpf40aQ9R1C7 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Prpf40aQ9R1C7 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Prpf40aQ9R1C7 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC27.3■■□□□ 1.96
Prpf40aQ9R1C7 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
Prpf40aQ9R1C7 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC27.29■■□□□ 1.96
Prpf40aQ9R1C7 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC27.29■■□□□ 1.96
Prpf40aQ9R1C7 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
Prpf40aQ9R1C7 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
Prpf40aQ9R1C7 Gm30346-201ENSMUST00000218641 1699 ntBASIC27.27■■□□□ 1.96
Prpf40aQ9R1C7 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.96
Prpf40aQ9R1C7 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Prpf40aQ9R1C7 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC27.26■■□□□ 1.95
Prpf40aQ9R1C7 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Prpf40aQ9R1C7 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC27.25■■□□□ 1.95
Prpf40aQ9R1C7 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
Prpf40aQ9R1C7 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC27.23■■□□□ 1.95
Prpf40aQ9R1C7 Gm6345-201ENSMUST00000180378 1691 ntBASIC27.21■■□□□ 1.95
Prpf40aQ9R1C7 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC27.21■■□□□ 1.95
Prpf40aQ9R1C7 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
Prpf40aQ9R1C7 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
Prpf40aQ9R1C7 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
Prpf40aQ9R1C7 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
Prpf40aQ9R1C7 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
Prpf40aQ9R1C7 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC27.17■■□□□ 1.94
Prpf40aQ9R1C7 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC27.15■■□□□ 1.94
Prpf40aQ9R1C7 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Prpf40aQ9R1C7 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Prpf40aQ9R1C7 Tdp2-203ENSMUST00000223804 1136 ntBASIC27.14■■□□□ 1.94
Prpf40aQ9R1C7 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
Prpf40aQ9R1C7 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC27.13■■□□□ 1.93
Prpf40aQ9R1C7 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Prpf40aQ9R1C7 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
Prpf40aQ9R1C7 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC27.11■■□□□ 1.93
Prpf40aQ9R1C7 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC27.11■■□□□ 1.93
Prpf40aQ9R1C7 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
Prpf40aQ9R1C7 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Retrieved 100 of 76,532 protein–RNA pairs in 15.5 ms