Protein–RNA interactions for Protein: Q5R1I8

Trav3-1, T cell receptor alpha variable 3-1 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-1Q5R1I8 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trav3-1Q5R1I8 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
Trav3-1Q5R1I8 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
Trav3-1Q5R1I8 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trav3-1Q5R1I8 Gm43445-201ENSMUST00000198564 2091 ntBASIC17.26■□□□□ 0.35
Trav3-1Q5R1I8 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
Trav3-1Q5R1I8 AC122428.3-201ENSMUST00000215551 2290 ntBASIC17.26■□□□□ 0.35
Trav3-1Q5R1I8 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trav3-1Q5R1I8 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trav3-1Q5R1I8 CT025624.2-201ENSMUST00000223609 1909 ntBASIC17.25■□□□□ 0.35
Trav3-1Q5R1I8 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC17.25■□□□□ 0.35
Trav3-1Q5R1I8 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trav3-1Q5R1I8 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Trav3-1Q5R1I8 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trav3-1Q5R1I8 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trav3-1Q5R1I8 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trav3-1Q5R1I8 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trav3-1Q5R1I8 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trav3-1Q5R1I8 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav3-1Q5R1I8 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav3-1Q5R1I8 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trav3-1Q5R1I8 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC17.2■□□□□ 0.34
Trav3-1Q5R1I8 Gm6658-202ENSMUST00000209493 1885 ntBASIC17.2■□□□□ 0.34
Trav3-1Q5R1I8 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav3-1Q5R1I8 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav3-1Q5R1I8 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav3-1Q5R1I8 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
Trav3-1Q5R1I8 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav3-1Q5R1I8 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav3-1Q5R1I8 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trav3-1Q5R1I8 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav3-1Q5R1I8 Amer2-203ENSMUST00000225247 2662 ntBASIC17.16■□□□□ 0.34
Trav3-1Q5R1I8 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav3-1Q5R1I8 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Trav3-1Q5R1I8 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Trav3-1Q5R1I8 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav3-1Q5R1I8 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav3-1Q5R1I8 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav3-1Q5R1I8 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav3-1Q5R1I8 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav3-1Q5R1I8 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav3-1Q5R1I8 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Trav3-1Q5R1I8 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav3-1Q5R1I8 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav3-1Q5R1I8 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC17.12■□□□□ 0.33
Trav3-1Q5R1I8 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Trav3-1Q5R1I8 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Trav3-1Q5R1I8 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Trav3-1Q5R1I8 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav3-1Q5R1I8 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trav3-1Q5R1I8 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trav3-1Q5R1I8 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Trav3-1Q5R1I8 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav3-1Q5R1I8 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav3-1Q5R1I8 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav3-1Q5R1I8 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Trav3-1Q5R1I8 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav3-1Q5R1I8 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trav3-1Q5R1I8 Gm17641-201ENSMUST00000166328 2350 ntBASIC17.09■□□□□ 0.33
Trav3-1Q5R1I8 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav3-1Q5R1I8 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trav3-1Q5R1I8 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav3-1Q5R1I8 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Trav3-1Q5R1I8 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Trav3-1Q5R1I8 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Trav3-1Q5R1I8 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Trav3-1Q5R1I8 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trav3-1Q5R1I8 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trav3-1Q5R1I8 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav3-1Q5R1I8 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav3-1Q5R1I8 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Trav3-1Q5R1I8 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav3-1Q5R1I8 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC17.03■□□□□ 0.32
Trav3-1Q5R1I8 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trav3-1Q5R1I8 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trav3-1Q5R1I8 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trav3-1Q5R1I8 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Trav3-1Q5R1I8 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
Trav3-1Q5R1I8 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trav3-1Q5R1I8 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trav3-1Q5R1I8 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Trav3-1Q5R1I8 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav3-1Q5R1I8 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav3-1Q5R1I8 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Trav3-1Q5R1I8 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trav3-1Q5R1I8 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Trav3-1Q5R1I8 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav3-1Q5R1I8 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav3-1Q5R1I8 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Trav3-1Q5R1I8 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Trav3-1Q5R1I8 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
Trav3-1Q5R1I8 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Trav3-1Q5R1I8 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trav3-1Q5R1I8 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Trav3-1Q5R1I8 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
Trav3-1Q5R1I8 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trav3-1Q5R1I8 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trav3-1Q5R1I8 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trav3-1Q5R1I8 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Trav3-1Q5R1I8 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms