Protein–RNA interactions for Protein: Q5R1H8

Trav8d-1, T cell receptor alpha variable 8D-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8d-1Q5R1H8 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trav8d-1Q5R1H8 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trav8d-1Q5R1H8 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Trav8d-1Q5R1H8 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
Trav8d-1Q5R1H8 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trav8d-1Q5R1H8 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Trav8d-1Q5R1H8 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trav8d-1Q5R1H8 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC20.41■□□□□ 0.86
Trav8d-1Q5R1H8 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC20.39■□□□□ 0.85
Trav8d-1Q5R1H8 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
Trav8d-1Q5R1H8 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Trav8d-1Q5R1H8 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trav8d-1Q5R1H8 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trav8d-1Q5R1H8 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trav8d-1Q5R1H8 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Trav8d-1Q5R1H8 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
Trav8d-1Q5R1H8 AL845457.1-201ENSMUST00000197244 68 ntBASIC20.37■□□□□ 0.85
Trav8d-1Q5R1H8 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trav8d-1Q5R1H8 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Trav8d-1Q5R1H8 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Trav8d-1Q5R1H8 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Trav8d-1Q5R1H8 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trav8d-1Q5R1H8 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trav8d-1Q5R1H8 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC20.33■□□□□ 0.84
Trav8d-1Q5R1H8 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Trav8d-1Q5R1H8 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Trav8d-1Q5R1H8 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Trav8d-1Q5R1H8 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trav8d-1Q5R1H8 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trav8d-1Q5R1H8 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trav8d-1Q5R1H8 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trav8d-1Q5R1H8 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Trav8d-1Q5R1H8 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trav8d-1Q5R1H8 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trav8d-1Q5R1H8 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Trav8d-1Q5R1H8 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trav8d-1Q5R1H8 AC166822.3-201ENSMUST00000227394 661 ntBASIC20.25■□□□□ 0.83
Trav8d-1Q5R1H8 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Trav8d-1Q5R1H8 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trav8d-1Q5R1H8 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Trav8d-1Q5R1H8 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trav8d-1Q5R1H8 Fezf2-202ENSMUST00000224023 1917 ntBASIC20.21■□□□□ 0.83
Trav8d-1Q5R1H8 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Trav8d-1Q5R1H8 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trav8d-1Q5R1H8 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trav8d-1Q5R1H8 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC20.18■□□□□ 0.82
Trav8d-1Q5R1H8 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC20.17■□□□□ 0.82
Trav8d-1Q5R1H8 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC20.17■□□□□ 0.82
Trav8d-1Q5R1H8 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trav8d-1Q5R1H8 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Trav8d-1Q5R1H8 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trav8d-1Q5R1H8 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trav8d-1Q5R1H8 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC20.15■□□□□ 0.82
Trav8d-1Q5R1H8 AC153890.1-201ENSMUST00000220021 2469 ntBASIC20.13■□□□□ 0.81
Trav8d-1Q5R1H8 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trav8d-1Q5R1H8 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trav8d-1Q5R1H8 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Trav8d-1Q5R1H8 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trav8d-1Q5R1H8 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trav8d-1Q5R1H8 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trav8d-1Q5R1H8 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Trav8d-1Q5R1H8 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trav8d-1Q5R1H8 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Trav8d-1Q5R1H8 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trav8d-1Q5R1H8 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trav8d-1Q5R1H8 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trav8d-1Q5R1H8 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trav8d-1Q5R1H8 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trav8d-1Q5R1H8 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Trav8d-1Q5R1H8 Mipep-204ENSMUST00000225043 1548 ntBASIC20.05■□□□□ 0.8
Trav8d-1Q5R1H8 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trav8d-1Q5R1H8 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trav8d-1Q5R1H8 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Trav8d-1Q5R1H8 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trav8d-1Q5R1H8 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Trav8d-1Q5R1H8 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Trav8d-1Q5R1H8 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trav8d-1Q5R1H8 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC20.02■□□□□ 0.8
Trav8d-1Q5R1H8 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trav8d-1Q5R1H8 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC20.02■□□□□ 0.8
Trav8d-1Q5R1H8 Gm24804-201ENSMUST00000174982 85 ntBASIC20.02■□□□□ 0.8
Trav8d-1Q5R1H8 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Trav8d-1Q5R1H8 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.79
Trav8d-1Q5R1H8 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Trav8d-1Q5R1H8 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC20■□□□□ 0.79
Trav8d-1Q5R1H8 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Trav8d-1Q5R1H8 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC20■□□□□ 0.79
Trav8d-1Q5R1H8 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trav8d-1Q5R1H8 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Trav8d-1Q5R1H8 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC19.99■□□□□ 0.79
Trav8d-1Q5R1H8 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trav8d-1Q5R1H8 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trav8d-1Q5R1H8 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Trav8d-1Q5R1H8 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trav8d-1Q5R1H8 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trav8d-1Q5R1H8 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trav8d-1Q5R1H8 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Trav8d-1Q5R1H8 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trav8d-1Q5R1H8 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Trav8d-1Q5R1H8 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 12.6 ms