Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC24.26■■□□□ 1.47
Ptchd3Q0EEE2 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Ptchd3Q0EEE2 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC24.24■■□□□ 1.47
Ptchd3Q0EEE2 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
Ptchd3Q0EEE2 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC24.2■■□□□ 1.47
Ptchd3Q0EEE2 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Ptchd3Q0EEE2 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Ptchd3Q0EEE2 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC24.19■■□□□ 1.46
Ptchd3Q0EEE2 AC166822.3-201ENSMUST00000227394 661 ntBASIC24.19■■□□□ 1.46
Ptchd3Q0EEE2 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Ptchd3Q0EEE2 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Ptchd3Q0EEE2 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC24.17■■□□□ 1.46
Ptchd3Q0EEE2 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Ptchd3Q0EEE2 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
Ptchd3Q0EEE2 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Ptchd3Q0EEE2 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC24.16■■□□□ 1.46
Ptchd3Q0EEE2 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Ptchd3Q0EEE2 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
Ptchd3Q0EEE2 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
Ptchd3Q0EEE2 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC24.11■■□□□ 1.45
Ptchd3Q0EEE2 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC24.1■■□□□ 1.45
Ptchd3Q0EEE2 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Ptchd3Q0EEE2 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC24.06■■□□□ 1.44
Ptchd3Q0EEE2 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
Ptchd3Q0EEE2 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Ptchd3Q0EEE2 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC24.04■■□□□ 1.44
Ptchd3Q0EEE2 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC24.04■■□□□ 1.44
Ptchd3Q0EEE2 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
Ptchd3Q0EEE2 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC24.02■■□□□ 1.44
Ptchd3Q0EEE2 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Ptchd3Q0EEE2 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Ptchd3Q0EEE2 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
Ptchd3Q0EEE2 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Ptchd3Q0EEE2 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Ptchd3Q0EEE2 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
Ptchd3Q0EEE2 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Ptchd3Q0EEE2 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Ptchd3Q0EEE2 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Ptchd3Q0EEE2 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
Ptchd3Q0EEE2 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
Ptchd3Q0EEE2 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Ptchd3Q0EEE2 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Ptchd3Q0EEE2 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Ptchd3Q0EEE2 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC23.93■■□□□ 1.42
Ptchd3Q0EEE2 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Ptchd3Q0EEE2 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Ptchd3Q0EEE2 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Ptchd3Q0EEE2 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Ptchd3Q0EEE2 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
Ptchd3Q0EEE2 Gm6345-201ENSMUST00000180378 1691 ntBASIC23.89■■□□□ 1.42
Ptchd3Q0EEE2 Fezf2-202ENSMUST00000224023 1917 ntBASIC23.89■■□□□ 1.42
Ptchd3Q0EEE2 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC23.88■■□□□ 1.41
Ptchd3Q0EEE2 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC23.88■■□□□ 1.41
Ptchd3Q0EEE2 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Ptchd3Q0EEE2 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC23.86■■□□□ 1.41
Ptchd3Q0EEE2 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Ptchd3Q0EEE2 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Ptchd3Q0EEE2 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
Ptchd3Q0EEE2 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Ptchd3Q0EEE2 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Ptchd3Q0EEE2 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Ptchd3Q0EEE2 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Ptchd3Q0EEE2 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.4
Ptchd3Q0EEE2 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC23.82■■□□□ 1.4
Ptchd3Q0EEE2 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Ptchd3Q0EEE2 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC23.81■■□□□ 1.4
Ptchd3Q0EEE2 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Ptchd3Q0EEE2 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ptchd3Q0EEE2 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Ptchd3Q0EEE2 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ptchd3Q0EEE2 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
Ptchd3Q0EEE2 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Ptchd3Q0EEE2 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Ptchd3Q0EEE2 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Ptchd3Q0EEE2 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC23.78■■□□□ 1.4
Ptchd3Q0EEE2 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ptchd3Q0EEE2 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ptchd3Q0EEE2 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Ptchd3Q0EEE2 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ptchd3Q0EEE2 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Ptchd3Q0EEE2 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Ptchd3Q0EEE2 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Ptchd3Q0EEE2 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
Ptchd3Q0EEE2 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Ptchd3Q0EEE2 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Ptchd3Q0EEE2 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Ptchd3Q0EEE2 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Ptchd3Q0EEE2 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC23.73■■□□□ 1.39
Ptchd3Q0EEE2 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Ptchd3Q0EEE2 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Ptchd3Q0EEE2 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Ptchd3Q0EEE2 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Ptchd3Q0EEE2 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
Ptchd3Q0EEE2 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
Ptchd3Q0EEE2 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Ptchd3Q0EEE2 AC153890.1-201ENSMUST00000220021 2469 ntBASIC23.69■■□□□ 1.38
Ptchd3Q0EEE2 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Ptchd3Q0EEE2 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Ptchd3Q0EEE2 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Ptchd3Q0EEE2 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Retrieved 100 of 76,532 protein–RNA pairs in 17.6 ms