Protein–RNA interactions for Protein: Q99PJ1

Pcdh15, Protocadherin-15, mousemouse

Predictions only

Length 1,943 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh15Q99PJ1 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Pcdh15Q99PJ1 Nrn1-203ENSMUST00000223611 1443 ntBASIC22.21■■□□□ 1.15
Pcdh15Q99PJ1 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Pcdh15Q99PJ1 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Pcdh15Q99PJ1 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Pcdh15Q99PJ1 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Pcdh15Q99PJ1 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC22.21■■□□□ 1.15
Pcdh15Q99PJ1 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Pcdh15Q99PJ1 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC22.21■■□□□ 1.15
Pcdh15Q99PJ1 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC22.21■■□□□ 1.15
Pcdh15Q99PJ1 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Pcdh15Q99PJ1 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Pcdh15Q99PJ1 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
Pcdh15Q99PJ1 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Pcdh15Q99PJ1 Gm20472-201ENSMUST00000174403 1240 ntBASIC22.2■■□□□ 1.14
Pcdh15Q99PJ1 Gm26971-201ENSMUST00000182423 1072 ntBASIC22.2■■□□□ 1.14
Pcdh15Q99PJ1 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Pcdh15Q99PJ1 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Pcdh15Q99PJ1 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC22.2■■□□□ 1.14
Pcdh15Q99PJ1 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Pcdh15Q99PJ1 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Pcdh15Q99PJ1 Gm44549-201ENSMUST00000208351 577 ntBASIC22.19■■□□□ 1.14
Pcdh15Q99PJ1 AC163280.1-201ENSMUST00000228194 1100 ntBASIC22.19■■□□□ 1.14
Pcdh15Q99PJ1 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Pcdh15Q99PJ1 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Pcdh15Q99PJ1 Gm10167-201ENSMUST00000150411 1479 ntBASIC22.19■■□□□ 1.14
Pcdh15Q99PJ1 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
Pcdh15Q99PJ1 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
Pcdh15Q99PJ1 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
Pcdh15Q99PJ1 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Pcdh15Q99PJ1 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC22.19■■□□□ 1.14
Pcdh15Q99PJ1 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Pcdh15Q99PJ1 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Pcdh15Q99PJ1 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Pcdh15Q99PJ1 Gm43799-201ENSMUST00000201845 579 ntBASIC22.19■■□□□ 1.14
Pcdh15Q99PJ1 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Pcdh15Q99PJ1 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Pcdh15Q99PJ1 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Pcdh15Q99PJ1 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC22.18■■□□□ 1.14
Pcdh15Q99PJ1 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Pcdh15Q99PJ1 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Pcdh15Q99PJ1 Gm15043-201ENSMUST00000118843 1543 ntBASIC22.18■■□□□ 1.14
Pcdh15Q99PJ1 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Pcdh15Q99PJ1 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Pcdh15Q99PJ1 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Pcdh15Q99PJ1 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Pcdh15Q99PJ1 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Pcdh15Q99PJ1 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Pcdh15Q99PJ1 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC22.17■■□□□ 1.14
Pcdh15Q99PJ1 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Pcdh15Q99PJ1 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Pcdh15Q99PJ1 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Pcdh15Q99PJ1 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC22.17■■□□□ 1.14
Pcdh15Q99PJ1 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
Pcdh15Q99PJ1 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
Pcdh15Q99PJ1 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
Pcdh15Q99PJ1 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Pcdh15Q99PJ1 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Pcdh15Q99PJ1 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC22.16■■□□□ 1.14
Pcdh15Q99PJ1 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC22.16■■□□□ 1.14
Pcdh15Q99PJ1 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC22.15■■□□□ 1.14
Pcdh15Q99PJ1 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Pcdh15Q99PJ1 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
Pcdh15Q99PJ1 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Pcdh15Q99PJ1 Gm15378-201ENSMUST00000121894 207 ntBASIC22.15■■□□□ 1.14
Pcdh15Q99PJ1 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Pcdh15Q99PJ1 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Pcdh15Q99PJ1 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC22.14■■□□□ 1.14
Pcdh15Q99PJ1 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
Pcdh15Q99PJ1 Gm15847-201ENSMUST00000121417 1065 ntBASIC22.14■■□□□ 1.14
Pcdh15Q99PJ1 Gm13158-201ENSMUST00000122007 736 ntBASIC22.14■■□□□ 1.14
Pcdh15Q99PJ1 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC22.14■■□□□ 1.14
Pcdh15Q99PJ1 Gm18666-201ENSMUST00000190039 958 ntBASIC22.14■■□□□ 1.14
Pcdh15Q99PJ1 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.14
Pcdh15Q99PJ1 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC22.14■■□□□ 1.14
Pcdh15Q99PJ1 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC22.14■■□□□ 1.13
Pcdh15Q99PJ1 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
Pcdh15Q99PJ1 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Pcdh15Q99PJ1 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
Pcdh15Q99PJ1 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC22.13■■□□□ 1.13
Pcdh15Q99PJ1 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC22.13■■□□□ 1.13
Pcdh15Q99PJ1 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC22.13■■□□□ 1.13
Pcdh15Q99PJ1 Gm10231-201ENSMUST00000181584 441 ntBASIC22.13■■□□□ 1.13
Pcdh15Q99PJ1 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Pcdh15Q99PJ1 Gm10175-202ENSMUST00000208752 441 ntBASIC22.13■■□□□ 1.13
Pcdh15Q99PJ1 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
Pcdh15Q99PJ1 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Pcdh15Q99PJ1 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
Pcdh15Q99PJ1 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Pcdh15Q99PJ1 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Pcdh15Q99PJ1 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Pcdh15Q99PJ1 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Pcdh15Q99PJ1 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Pcdh15Q99PJ1 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
Pcdh15Q99PJ1 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC22.12■■□□□ 1.13
Pcdh15Q99PJ1 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
Pcdh15Q99PJ1 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Pcdh15Q99PJ1 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Pcdh15Q99PJ1 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC22.11■■□□□ 1.13
Pcdh15Q99PJ1 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Retrieved 100 of 76,532 protein–RNA pairs in 18.6 ms