Protein–RNA interactions for Protein: Q8BTF7

Lig4, DNA ligase 4, mousemouse

Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig4Q8BTF7 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Lig4Q8BTF7 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC20.34■□□□□ 0.85
Lig4Q8BTF7 Gm20634-201ENSMUST00000090779 2956 ntBASIC20.34■□□□□ 0.85
Lig4Q8BTF7 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Lig4Q8BTF7 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Lig4Q8BTF7 Gm7291-201ENSMUST00000199147 382 ntBASIC20.33■□□□□ 0.85
Lig4Q8BTF7 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC20.33■□□□□ 0.85
Lig4Q8BTF7 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Lig4Q8BTF7 AC164629.5-201ENSMUST00000220387 632 ntBASIC20.33■□□□□ 0.85
Lig4Q8BTF7 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Lig4Q8BTF7 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Lig4Q8BTF7 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Lig4Q8BTF7 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Lig4Q8BTF7 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
Lig4Q8BTF7 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Lig4Q8BTF7 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Lig4Q8BTF7 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Lig4Q8BTF7 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Lig4Q8BTF7 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Lig4Q8BTF7 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Lig4Q8BTF7 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
Lig4Q8BTF7 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Lig4Q8BTF7 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Lig4Q8BTF7 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Lig4Q8BTF7 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Lig4Q8BTF7 Gm34220-201ENSMUST00000223001 2709 ntBASIC20.31■□□□□ 0.84
Lig4Q8BTF7 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC20.31■□□□□ 0.84
Lig4Q8BTF7 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Lig4Q8BTF7 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC20.31■□□□□ 0.84
Lig4Q8BTF7 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC20.31■□□□□ 0.84
Lig4Q8BTF7 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC20.31■□□□□ 0.84
Lig4Q8BTF7 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC20.31■□□□□ 0.84
Lig4Q8BTF7 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
Lig4Q8BTF7 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Lig4Q8BTF7 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lig4Q8BTF7 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lig4Q8BTF7 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC20.3■□□□□ 0.84
Lig4Q8BTF7 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
Lig4Q8BTF7 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lig4Q8BTF7 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
Lig4Q8BTF7 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Lig4Q8BTF7 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Lig4Q8BTF7 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Lig4Q8BTF7 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC20.3■□□□□ 0.84
Lig4Q8BTF7 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lig4Q8BTF7 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Lig4Q8BTF7 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Lig4Q8BTF7 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC20.3■□□□□ 0.84
Lig4Q8BTF7 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Lig4Q8BTF7 Gm7860-201ENSMUST00000121190 879 ntBASIC20.29■□□□□ 0.84
Lig4Q8BTF7 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Lig4Q8BTF7 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC20.29■□□□□ 0.84
Lig4Q8BTF7 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Lig4Q8BTF7 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Lig4Q8BTF7 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Lig4Q8BTF7 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Lig4Q8BTF7 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
Lig4Q8BTF7 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Lig4Q8BTF7 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Lig4Q8BTF7 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Lig4Q8BTF7 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Lig4Q8BTF7 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Lig4Q8BTF7 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC20.28■□□□□ 0.84
Lig4Q8BTF7 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
Lig4Q8BTF7 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Lig4Q8BTF7 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Lig4Q8BTF7 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Lig4Q8BTF7 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Lig4Q8BTF7 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Lig4Q8BTF7 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Lig4Q8BTF7 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Lig4Q8BTF7 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Lig4Q8BTF7 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Lig4Q8BTF7 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Lig4Q8BTF7 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Lig4Q8BTF7 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Lig4Q8BTF7 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Lig4Q8BTF7 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Lig4Q8BTF7 CT010467.1-202ENSMUST00000205406 714 ntBASIC20.27■□□□□ 0.84
Lig4Q8BTF7 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC20.27■□□□□ 0.84
Lig4Q8BTF7 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
Lig4Q8BTF7 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC20.27■□□□□ 0.83
Lig4Q8BTF7 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Lig4Q8BTF7 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Lig4Q8BTF7 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Lig4Q8BTF7 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
Lig4Q8BTF7 Ap3s1-204ENSMUST00000225520 957 ntBASIC20.26■□□□□ 0.83
Lig4Q8BTF7 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Lig4Q8BTF7 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Lig4Q8BTF7 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
Lig4Q8BTF7 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Lig4Q8BTF7 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Lig4Q8BTF7 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Lig4Q8BTF7 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Lig4Q8BTF7 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Lig4Q8BTF7 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Lig4Q8BTF7 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC20.25■□□□□ 0.83
Lig4Q8BTF7 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC20.25■□□□□ 0.83
Lig4Q8BTF7 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC20.25■□□□□ 0.83
Lig4Q8BTF7 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC20.25■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms