Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Trim56Q80VI1 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC22.78■■□□□ 1.24
Trim56Q80VI1 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Trim56Q80VI1 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Trim56Q80VI1 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC22.77■■□□□ 1.24
Trim56Q80VI1 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
Trim56Q80VI1 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC22.77■■□□□ 1.24
Trim56Q80VI1 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
Trim56Q80VI1 CT010467.1-202ENSMUST00000205406 714 ntBASIC22.77■■□□□ 1.24
Trim56Q80VI1 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Trim56Q80VI1 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
Trim56Q80VI1 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Trim56Q80VI1 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC22.76■■□□□ 1.23
Trim56Q80VI1 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Trim56Q80VI1 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Trim56Q80VI1 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC22.76■■□□□ 1.23
Trim56Q80VI1 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC22.76■■□□□ 1.23
Trim56Q80VI1 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC22.76■■□□□ 1.23
Trim56Q80VI1 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC22.76■■□□□ 1.23
Trim56Q80VI1 Notumos-201ENSMUST00000151998 2659 ntBASIC22.76■■□□□ 1.23
Trim56Q80VI1 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
Trim56Q80VI1 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC22.76■■□□□ 1.23
Trim56Q80VI1 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Trim56Q80VI1 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Trim56Q80VI1 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Trim56Q80VI1 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Trim56Q80VI1 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
Trim56Q80VI1 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC22.75■■□□□ 1.23
Trim56Q80VI1 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Trim56Q80VI1 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC22.75■■□□□ 1.23
Trim56Q80VI1 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC22.75■■□□□ 1.23
Trim56Q80VI1 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC22.75■■□□□ 1.23
Trim56Q80VI1 Gm18671-201ENSMUST00000214826 683 ntBASIC22.75■■□□□ 1.23
Trim56Q80VI1 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
Trim56Q80VI1 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC22.75■■□□□ 1.23
Trim56Q80VI1 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Trim56Q80VI1 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Trim56Q80VI1 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
Trim56Q80VI1 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC22.74■■□□□ 1.23
Trim56Q80VI1 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
Trim56Q80VI1 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
Trim56Q80VI1 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC22.74■■□□□ 1.23
Trim56Q80VI1 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC22.74■■□□□ 1.23
Trim56Q80VI1 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
Trim56Q80VI1 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
Trim56Q80VI1 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Trim56Q80VI1 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC22.74■■□□□ 1.23
Trim56Q80VI1 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Trim56Q80VI1 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
Trim56Q80VI1 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Trim56Q80VI1 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Trim56Q80VI1 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC22.73■■□□□ 1.23
Trim56Q80VI1 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC22.73■■□□□ 1.23
Trim56Q80VI1 Gm42569-201ENSMUST00000200539 472 ntBASIC22.73■■□□□ 1.23
Trim56Q80VI1 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Trim56Q80VI1 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Trim56Q80VI1 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC22.73■■□□□ 1.23
Trim56Q80VI1 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Trim56Q80VI1 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Trim56Q80VI1 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC22.73■■□□□ 1.23
Trim56Q80VI1 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Trim56Q80VI1 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC22.72■■□□□ 1.23
Trim56Q80VI1 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
Trim56Q80VI1 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Trim56Q80VI1 Gm13146-201ENSMUST00000118508 780 ntBASIC22.72■■□□□ 1.23
Trim56Q80VI1 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC22.72■■□□□ 1.23
Trim56Q80VI1 AV356131-201ENSMUST00000206201 750 ntBASIC22.72■■□□□ 1.23
Trim56Q80VI1 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Trim56Q80VI1 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Trim56Q80VI1 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC22.72■■□□□ 1.23
Trim56Q80VI1 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
Trim56Q80VI1 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
Trim56Q80VI1 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Trim56Q80VI1 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC22.71■■□□□ 1.23
Trim56Q80VI1 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC22.71■■□□□ 1.23
Trim56Q80VI1 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC22.71■■□□□ 1.23
Trim56Q80VI1 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Trim56Q80VI1 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC22.71■■□□□ 1.23
Trim56Q80VI1 Slc35b2-207ENSMUST00000226086 850 ntBASIC22.71■■□□□ 1.23
Trim56Q80VI1 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Trim56Q80VI1 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Trim56Q80VI1 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Trim56Q80VI1 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC22.7■■□□□ 1.23
Trim56Q80VI1 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC22.7■■□□□ 1.23
Trim56Q80VI1 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
Trim56Q80VI1 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Trim56Q80VI1 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
Trim56Q80VI1 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC22.7■■□□□ 1.22
Trim56Q80VI1 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Trim56Q80VI1 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Trim56Q80VI1 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Trim56Q80VI1 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC22.69■■□□□ 1.22
Trim56Q80VI1 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Trim56Q80VI1 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
Trim56Q80VI1 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Trim56Q80VI1 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Trim56Q80VI1 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC22.68■■□□□ 1.22
Trim56Q80VI1 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
Trim56Q80VI1 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC22.68■■□□□ 1.22
Trim56Q80VI1 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms