Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Col11a1Q61245 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Col11a1Q61245 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Col11a1Q61245 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC21.9■■□□□ 1.1
Col11a1Q61245 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.1
Col11a1Q61245 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Col11a1Q61245 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Col11a1Q61245 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Col11a1Q61245 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
Col11a1Q61245 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC21.89■■□□□ 1.09
Col11a1Q61245 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Col11a1Q61245 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Col11a1Q61245 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
Col11a1Q61245 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Col11a1Q61245 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
Col11a1Q61245 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC21.88■■□□□ 1.09
Col11a1Q61245 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Col11a1Q61245 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
Col11a1Q61245 Mir5122-201ENSMUST00000175004 89 ntBASIC21.88■■□□□ 1.09
Col11a1Q61245 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC21.88■■□□□ 1.09
Col11a1Q61245 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Col11a1Q61245 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Col11a1Q61245 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Col11a1Q61245 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC21.87■■□□□ 1.09
Col11a1Q61245 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Col11a1Q61245 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Col11a1Q61245 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Col11a1Q61245 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC21.87■■□□□ 1.09
Col11a1Q61245 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC21.87■■□□□ 1.09
Col11a1Q61245 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Col11a1Q61245 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
Col11a1Q61245 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Col11a1Q61245 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Col11a1Q61245 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Col11a1Q61245 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Col11a1Q61245 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC21.86■■□□□ 1.09
Col11a1Q61245 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
Col11a1Q61245 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Col11a1Q61245 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
Col11a1Q61245 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Col11a1Q61245 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Col11a1Q61245 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Col11a1Q61245 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Col11a1Q61245 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Col11a1Q61245 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Col11a1Q61245 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Col11a1Q61245 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC21.85■■□□□ 1.09
Col11a1Q61245 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Col11a1Q61245 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Col11a1Q61245 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Col11a1Q61245 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC21.85■■□□□ 1.09
Col11a1Q61245 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
Col11a1Q61245 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC21.85■■□□□ 1.09
Col11a1Q61245 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC21.85■■□□□ 1.09
Col11a1Q61245 Gm26971-201ENSMUST00000182423 1072 ntBASIC21.85■■□□□ 1.09
Col11a1Q61245 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC21.85■■□□□ 1.09
Col11a1Q61245 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Col11a1Q61245 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Col11a1Q61245 CT010444.2-201ENSMUST00000217877 1629 ntBASIC21.84■■□□□ 1.09
Col11a1Q61245 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col11a1Q61245 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col11a1Q61245 Gm32051-202ENSMUST00000197905 2385 ntBASIC21.84■■□□□ 1.09
Col11a1Q61245 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Col11a1Q61245 Nrn1-203ENSMUST00000223611 1443 ntBASIC21.84■■□□□ 1.09
Col11a1Q61245 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Col11a1Q61245 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Col11a1Q61245 Gm15847-201ENSMUST00000121417 1065 ntBASIC21.83■■□□□ 1.09
Col11a1Q61245 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC21.83■■□□□ 1.09
Col11a1Q61245 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Col11a1Q61245 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC21.83■■□□□ 1.09
Col11a1Q61245 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Col11a1Q61245 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC21.83■■□□□ 1.08
Col11a1Q61245 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Col11a1Q61245 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.08
Col11a1Q61245 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC21.83■■□□□ 1.08
Col11a1Q61245 Gm44549-201ENSMUST00000208351 577 ntBASIC21.83■■□□□ 1.08
Col11a1Q61245 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC21.83■■□□□ 1.08
Col11a1Q61245 AC163280.1-201ENSMUST00000228194 1100 ntBASIC21.83■■□□□ 1.08
Col11a1Q61245 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
Col11a1Q61245 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Col11a1Q61245 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
Col11a1Q61245 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col11a1Q61245 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC21.82■■□□□ 1.08
Col11a1Q61245 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
Col11a1Q61245 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC21.82■■□□□ 1.08
Col11a1Q61245 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC21.82■■□□□ 1.08
Col11a1Q61245 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC21.81■■□□□ 1.08
Col11a1Q61245 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Col11a1Q61245 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col11a1Q61245 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC21.81■■□□□ 1.08
Col11a1Q61245 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col11a1Q61245 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC21.81■■□□□ 1.08
Col11a1Q61245 Gm13158-201ENSMUST00000122007 736 ntBASIC21.81■■□□□ 1.08
Col11a1Q61245 Gm20472-201ENSMUST00000174403 1240 ntBASIC21.81■■□□□ 1.08
Col11a1Q61245 Gm18666-201ENSMUST00000190039 958 ntBASIC21.81■■□□□ 1.08
Col11a1Q61245 AC121577.1-201ENSMUST00000227302 707 ntBASIC21.81■■□□□ 1.08
Col11a1Q61245 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col11a1Q61245 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC21.8■■□□□ 1.08
Col11a1Q61245 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC21.8■■□□□ 1.08
Col11a1Q61245 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC21.8■■□□□ 1.08
Retrieved 100 of 76,532 protein–RNA pairs in 17.2 ms