Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdh11P55288 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdh11P55288 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdh11P55288 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdh11P55288 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdh11P55288 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdh11P55288 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Cdh11P55288 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdh11P55288 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdh11P55288 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC17.41■□□□□ 0.38
Cdh11P55288 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdh11P55288 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
Cdh11P55288 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC17.41■□□□□ 0.38
Cdh11P55288 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdh11P55288 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdh11P55288 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdh11P55288 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdh11P55288 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdh11P55288 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdh11P55288 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Cdh11P55288 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdh11P55288 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Cdh11P55288 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdh11P55288 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdh11P55288 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC17.4■□□□□ 0.38
Cdh11P55288 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdh11P55288 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Cdh11P55288 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdh11P55288 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC17.4■□□□□ 0.38
Cdh11P55288 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Cdh11P55288 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdh11P55288 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
Cdh11P55288 Mir7075-201ENSMUST00000184187 82 ntBASIC17.4■□□□□ 0.38
Cdh11P55288 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdh11P55288 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC17.4■□□□□ 0.38
Cdh11P55288 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdh11P55288 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Cdh11P55288 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdh11P55288 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC17.4■□□□□ 0.38
Cdh11P55288 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdh11P55288 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
Cdh11P55288 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdh11P55288 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Cdh11P55288 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
Cdh11P55288 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC17.39■□□□□ 0.37
Cdh11P55288 Gm43530-201ENSMUST00000195920 274 ntBASIC17.39■□□□□ 0.37
Cdh11P55288 Gm5576-201ENSMUST00000075809 1236 ntBASIC17.39■□□□□ 0.37
Cdh11P55288 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdh11P55288 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Cdh11P55288 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdh11P55288 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdh11P55288 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdh11P55288 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdh11P55288 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdh11P55288 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
Cdh11P55288 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdh11P55288 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdh11P55288 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC17.38■□□□□ 0.37
Cdh11P55288 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdh11P55288 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC17.38■□□□□ 0.37
Cdh11P55288 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC17.38■□□□□ 0.37
Cdh11P55288 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
Cdh11P55288 Gm6139-201ENSMUST00000079261 882 ntBASIC17.38■□□□□ 0.37
Cdh11P55288 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdh11P55288 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdh11P55288 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdh11P55288 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Cdh11P55288 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdh11P55288 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Cdh11P55288 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC17.37■□□□□ 0.37
Cdh11P55288 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdh11P55288 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdh11P55288 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Cdh11P55288 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdh11P55288 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Cdh11P55288 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC17.37■□□□□ 0.37
Cdh11P55288 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Cdh11P55288 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC17.37■□□□□ 0.37
Cdh11P55288 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdh11P55288 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Cdh11P55288 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdh11P55288 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdh11P55288 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdh11P55288 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Cdh11P55288 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Cdh11P55288 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cdh11P55288 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC17.36■□□□□ 0.37
Cdh11P55288 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Cdh11P55288 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cdh11P55288 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Cdh11P55288 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cdh11P55288 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cdh11P55288 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Cdh11P55288 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cdh11P55288 Cdkn3-203ENSMUST00000227149 1952 ntBASIC17.35■□□□□ 0.37
Cdh11P55288 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cdh11P55288 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cdh11P55288 Gm43231-201ENSMUST00000202960 2258 ntBASIC17.35■□□□□ 0.37
Cdh11P55288 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cdh11P55288 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms