Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC14.88□□□□□ -0.03
Hoxd3P09027 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC14.88□□□□□ -0.03
Hoxd3P09027 CT030146.1-201ENSMUST00000220919 217 ntBASIC14.88□□□□□ -0.03
Hoxd3P09027 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Hoxd3P09027 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Hoxd3P09027 Iqck-206ENSMUST00000208658 2891 ntBASIC14.88□□□□□ -0.03
Hoxd3P09027 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Hoxd3P09027 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Hoxd3P09027 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Hoxd3P09027 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Hoxd3P09027 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxd3P09027 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxd3P09027 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxd3P09027 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxd3P09027 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxd3P09027 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Hoxd3P09027 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxd3P09027 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxd3P09027 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxd3P09027 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Hoxd3P09027 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC14.87□□□□□ -0.03
Hoxd3P09027 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxd3P09027 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxd3P09027 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxd3P09027 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxd3P09027 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxd3P09027 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Hoxd3P09027 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Hoxd3P09027 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC14.87□□□□□ -0.03
Hoxd3P09027 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC14.87□□□□□ -0.03
Hoxd3P09027 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxd3P09027 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxd3P09027 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Hoxd3P09027 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxd3P09027 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxd3P09027 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxd3P09027 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Hoxd3P09027 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxd3P09027 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
Hoxd3P09027 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC14.86□□□□□ -0.03
Hoxd3P09027 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC14.86□□□□□ -0.03
Hoxd3P09027 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxd3P09027 Gm37179-201ENSMUST00000194862 823 ntBASIC14.86□□□□□ -0.03
Hoxd3P09027 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxd3P09027 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxd3P09027 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC14.86□□□□□ -0.03
Hoxd3P09027 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxd3P09027 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxd3P09027 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxd3P09027 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Hoxd3P09027 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxd3P09027 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxd3P09027 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxd3P09027 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxd3P09027 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hoxd3P09027 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
Hoxd3P09027 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Hoxd3P09027 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Hoxd3P09027 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Hoxd3P09027 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Hoxd3P09027 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Hoxd3P09027 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Hoxd3P09027 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Hoxd3P09027 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Hoxd3P09027 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Hoxd3P09027 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Hoxd3P09027 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Hoxd3P09027 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Hoxd3P09027 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Hoxd3P09027 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Hoxd3P09027 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Hoxd3P09027 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Hoxd3P09027 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Hoxd3P09027 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Hoxd3P09027 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Hoxd3P09027 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Hoxd3P09027 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC14.84□□□□□ -0.03
Hoxd3P09027 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Hoxd3P09027 Gm5297-201ENSMUST00000198555 1171 ntBASIC14.84□□□□□ -0.03
Hoxd3P09027 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC14.84□□□□□ -0.03
Hoxd3P09027 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Hoxd3P09027 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Hoxd3P09027 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC14.84□□□□□ -0.03
Hoxd3P09027 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Hoxd3P09027 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
Hoxd3P09027 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC14.83□□□□□ -0.03
Hoxd3P09027 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Hoxd3P09027 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Hoxd3P09027 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Hoxd3P09027 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Hoxd3P09027 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC14.83□□□□□ -0.04
Hoxd3P09027 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Hoxd3P09027 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC14.83□□□□□ -0.04
Hoxd3P09027 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC14.83□□□□□ -0.04
Hoxd3P09027 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC14.83□□□□□ -0.04
Hoxd3P09027 Gm29257-201ENSMUST00000186115 639 ntBASIC14.83□□□□□ -0.04
Hoxd3P09027 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC14.83□□□□□ -0.04
Hoxd3P09027 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Hoxd3P09027 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC14.83□□□□□ -0.04
Hoxd3P09027 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC14.83□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms