Protein–RNA interactions for Protein: O55055

Trdmt1, tRNA (cytosine(38)-C(5))-methyltransferase, mousemouse

Predictions only

Length 415 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trdmt1O55055 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
Trdmt1O55055 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC21.32■■□□□ 1
Trdmt1O55055 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Trdmt1O55055 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC21.32■■□□□ 1
Trdmt1O55055 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trdmt1O55055 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Trdmt1O55055 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC21.32■■□□□ 1
Trdmt1O55055 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trdmt1O55055 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Trdmt1O55055 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trdmt1O55055 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC21.31■■□□□ 1
Trdmt1O55055 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trdmt1O55055 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC21.31■■□□□ 1
Trdmt1O55055 Gm13042-201ENSMUST00000119244 1955 ntBASIC21.3■■□□□ 1
Trdmt1O55055 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trdmt1O55055 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC21.3■■□□□ 1
Trdmt1O55055 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC21.3■■□□□ 1
Trdmt1O55055 Trmt13-210ENSMUST00000198454 880 ntBASIC21.3■■□□□ 1
Trdmt1O55055 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC21.3■■□□□ 1
Trdmt1O55055 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trdmt1O55055 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
Trdmt1O55055 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC21.3■■□□□ 1
Trdmt1O55055 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trdmt1O55055 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trdmt1O55055 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC21.29■■□□□ 1
Trdmt1O55055 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC21.29■■□□□ 1
Trdmt1O55055 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC21.29■■□□□ 1
Trdmt1O55055 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trdmt1O55055 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC21.29■■□□□ 1
Trdmt1O55055 Gm44878-201ENSMUST00000205812 1295 ntBASIC21.29■■□□□ 1
Trdmt1O55055 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trdmt1O55055 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC21.29■■□□□ 1
Trdmt1O55055 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trdmt1O55055 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC21.28■■□□□ 1
Trdmt1O55055 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trdmt1O55055 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Trdmt1O55055 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trdmt1O55055 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Trdmt1O55055 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC21.28■■□□□ 1
Trdmt1O55055 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
Trdmt1O55055 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC21.28■■□□□ 1
Trdmt1O55055 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trdmt1O55055 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC21.27■■□□□ 1
Trdmt1O55055 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Trdmt1O55055 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC21.27■■□□□ 1
Trdmt1O55055 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trdmt1O55055 Gm20100-201ENSMUST00000209418 2272 ntBASIC21.27■■□□□ 1
Trdmt1O55055 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC21.27■■□□□ 1
Trdmt1O55055 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Trdmt1O55055 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trdmt1O55055 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trdmt1O55055 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC21.26■□□□□ 0.99
Trdmt1O55055 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Trdmt1O55055 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trdmt1O55055 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Trdmt1O55055 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Trdmt1O55055 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trdmt1O55055 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Trdmt1O55055 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC21.26■□□□□ 0.99
Trdmt1O55055 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Trdmt1O55055 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trdmt1O55055 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC21.25■□□□□ 0.99
Trdmt1O55055 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Trdmt1O55055 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Trdmt1O55055 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Trdmt1O55055 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trdmt1O55055 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Trdmt1O55055 Gm13509-201ENSMUST00000119733 1308 ntBASIC21.25■□□□□ 0.99
Trdmt1O55055 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trdmt1O55055 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trdmt1O55055 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trdmt1O55055 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trdmt1O55055 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trdmt1O55055 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trdmt1O55055 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trdmt1O55055 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC21.23■□□□□ 0.99
Trdmt1O55055 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC21.23■□□□□ 0.99
Trdmt1O55055 Gm10812-201ENSMUST00000099864 546 ntBASIC21.23■□□□□ 0.99
Trdmt1O55055 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Trdmt1O55055 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC21.23■□□□□ 0.99
Trdmt1O55055 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Trdmt1O55055 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trdmt1O55055 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trdmt1O55055 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trdmt1O55055 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Trdmt1O55055 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Trdmt1O55055 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Trdmt1O55055 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trdmt1O55055 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC21.22■□□□□ 0.99
Trdmt1O55055 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trdmt1O55055 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Trdmt1O55055 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Trdmt1O55055 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trdmt1O55055 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC21.21■□□□□ 0.99
Trdmt1O55055 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trdmt1O55055 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Trdmt1O55055 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trdmt1O55055 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trdmt1O55055 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trdmt1O55055 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 15.5 ms