Protein–RNA interactions for Protein: O54990

Prom1, Prominin-1, mousemouse

Predictions only

Length 867 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prom1O54990 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC21.31■■□□□ 1
Prom1O54990 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Prom1O54990 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
Prom1O54990 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Prom1O54990 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC21.31■■□□□ 1
Prom1O54990 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC21.31■■□□□ 1
Prom1O54990 Gm44672-201ENSMUST00000206944 1098 ntBASIC21.31■■□□□ 1
Prom1O54990 AC122769.4-201ENSMUST00000228166 901 ntBASIC21.31■■□□□ 1
Prom1O54990 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Prom1O54990 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Prom1O54990 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC21.31■■□□□ 1
Prom1O54990 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Prom1O54990 AC131586.2-201ENSMUST00000228370 1512 ntBASIC21.3■■□□□ 1
Prom1O54990 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Prom1O54990 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Prom1O54990 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Prom1O54990 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Prom1O54990 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Prom1O54990 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Prom1O54990 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Prom1O54990 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC21.29■■□□□ 1
Prom1O54990 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC21.29■■□□□ 1
Prom1O54990 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC21.29■■□□□ 1
Prom1O54990 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC21.29■■□□□ 1
Prom1O54990 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Prom1O54990 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Prom1O54990 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Prom1O54990 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Prom1O54990 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Prom1O54990 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Prom1O54990 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Prom1O54990 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC21.28■■□□□ 1
Prom1O54990 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC21.28■■□□□ 1
Prom1O54990 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Prom1O54990 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Prom1O54990 Gm13168-201ENSMUST00000121771 632 ntBASIC21.28■■□□□ 1
Prom1O54990 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC21.28■■□□□ 1
Prom1O54990 AC135637.1-201ENSMUST00000227750 365 ntBASIC21.28■■□□□ 1
Prom1O54990 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC21.28■■□□□ 1
Prom1O54990 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC21.28■■□□□ 1
Prom1O54990 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Prom1O54990 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Prom1O54990 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Prom1O54990 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Prom1O54990 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
Prom1O54990 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.27■■□□□ 1
Prom1O54990 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC21.27■■□□□ 1
Prom1O54990 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Prom1O54990 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Prom1O54990 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Prom1O54990 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Prom1O54990 Gm37563-201ENSMUST00000192580 1513 ntBASIC21.27■■□□□ 1
Prom1O54990 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Prom1O54990 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Prom1O54990 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC21.27■■□□□ 1
Prom1O54990 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC21.27■■□□□ 1
Prom1O54990 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
Prom1O54990 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Prom1O54990 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Prom1O54990 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Prom1O54990 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC21.26■□□□□ 0.99
Prom1O54990 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC21.26■□□□□ 0.99
Prom1O54990 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC21.26■□□□□ 0.99
Prom1O54990 Gm26524-201ENSMUST00000192339 390 ntBASIC21.26■□□□□ 0.99
Prom1O54990 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Prom1O54990 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Prom1O54990 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Prom1O54990 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Prom1O54990 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
Prom1O54990 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Prom1O54990 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC21.25■□□□□ 0.99
Prom1O54990 Gm8520-201ENSMUST00000186517 868 ntBASIC21.25■□□□□ 0.99
Prom1O54990 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Prom1O54990 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Prom1O54990 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Prom1O54990 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Prom1O54990 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Prom1O54990 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC21.24■□□□□ 0.99
Prom1O54990 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Prom1O54990 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Prom1O54990 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Prom1O54990 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Prom1O54990 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Prom1O54990 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC21.23■□□□□ 0.99
Prom1O54990 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Prom1O54990 Gm32699-201ENSMUST00000221728 1988 ntBASIC21.23■□□□□ 0.99
Prom1O54990 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Prom1O54990 Gm26971-201ENSMUST00000182423 1072 ntBASIC21.23■□□□□ 0.99
Prom1O54990 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC21.23■□□□□ 0.99
Prom1O54990 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Prom1O54990 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Prom1O54990 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Prom1O54990 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Prom1O54990 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Prom1O54990 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Prom1O54990 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Prom1O54990 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Prom1O54990 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC21.22■□□□□ 0.99
Prom1O54990 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Prom1O54990 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC21.22■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 63.2 ms