Protein–RNA interactions for Protein: G3X8Y1

Trim55, MCG19772, mousemouse

Predictions only

Length 545 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim55G3X8Y1 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim55G3X8Y1 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim55G3X8Y1 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim55G3X8Y1 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim55G3X8Y1 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim55G3X8Y1 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Trim55G3X8Y1 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC19.68■□□□□ 0.74
Trim55G3X8Y1 AC116713.1-201ENSMUST00000215074 430 ntBASIC19.68■□□□□ 0.74
Trim55G3X8Y1 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC19.68■□□□□ 0.74
Trim55G3X8Y1 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Trim55G3X8Y1 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim55G3X8Y1 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Trim55G3X8Y1 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim55G3X8Y1 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Trim55G3X8Y1 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC19.67■□□□□ 0.74
Trim55G3X8Y1 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Trim55G3X8Y1 Gm16437-201ENSMUST00000025669 507 ntBASIC19.67■□□□□ 0.74
Trim55G3X8Y1 Gm43702-201ENSMUST00000198772 2546 ntBASIC19.67■□□□□ 0.74
Trim55G3X8Y1 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim55G3X8Y1 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim55G3X8Y1 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim55G3X8Y1 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Trim55G3X8Y1 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC19.67■□□□□ 0.74
Trim55G3X8Y1 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim55G3X8Y1 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim55G3X8Y1 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim55G3X8Y1 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim55G3X8Y1 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC19.66■□□□□ 0.74
Trim55G3X8Y1 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Trim55G3X8Y1 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC19.66■□□□□ 0.74
Trim55G3X8Y1 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
Trim55G3X8Y1 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC19.66■□□□□ 0.74
Trim55G3X8Y1 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trim55G3X8Y1 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim55G3X8Y1 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim55G3X8Y1 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Trim55G3X8Y1 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trim55G3X8Y1 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim55G3X8Y1 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim55G3X8Y1 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Trim55G3X8Y1 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim55G3X8Y1 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim55G3X8Y1 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim55G3X8Y1 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
Trim55G3X8Y1 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim55G3X8Y1 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC19.65■□□□□ 0.74
Trim55G3X8Y1 Nsd1-206ENSMUST00000224918 1001 ntBASIC19.65■□□□□ 0.74
Trim55G3X8Y1 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim55G3X8Y1 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trim55G3X8Y1 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trim55G3X8Y1 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC19.64■□□□□ 0.73
Trim55G3X8Y1 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim55G3X8Y1 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim55G3X8Y1 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Trim55G3X8Y1 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim55G3X8Y1 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim55G3X8Y1 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim55G3X8Y1 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim55G3X8Y1 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Trim55G3X8Y1 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim55G3X8Y1 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim55G3X8Y1 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim55G3X8Y1 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC19.64■□□□□ 0.73
Trim55G3X8Y1 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim55G3X8Y1 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim55G3X8Y1 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim55G3X8Y1 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trim55G3X8Y1 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trim55G3X8Y1 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC19.63■□□□□ 0.73
Trim55G3X8Y1 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC19.62■□□□□ 0.73
Trim55G3X8Y1 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim55G3X8Y1 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim55G3X8Y1 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim55G3X8Y1 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim55G3X8Y1 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Trim55G3X8Y1 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC19.62■□□□□ 0.73
Trim55G3X8Y1 Gm12366-201ENSMUST00000121722 873 ntBASIC19.62■□□□□ 0.73
Trim55G3X8Y1 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC19.62■□□□□ 0.73
Trim55G3X8Y1 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC19.62■□□□□ 0.73
Trim55G3X8Y1 Gm5786-201ENSMUST00000085368 882 ntBASIC19.62■□□□□ 0.73
Trim55G3X8Y1 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim55G3X8Y1 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim55G3X8Y1 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim55G3X8Y1 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim55G3X8Y1 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim55G3X8Y1 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim55G3X8Y1 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC19.61■□□□□ 0.73
Trim55G3X8Y1 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trim55G3X8Y1 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim55G3X8Y1 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Trim55G3X8Y1 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim55G3X8Y1 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trim55G3X8Y1 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim55G3X8Y1 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim55G3X8Y1 AC154231.1-201ENSMUST00000220564 2175 ntBASIC19.6■□□□□ 0.73
Trim55G3X8Y1 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC19.6■□□□□ 0.73
Trim55G3X8Y1 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim55G3X8Y1 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim55G3X8Y1 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC19.6■□□□□ 0.73
Trim55G3X8Y1 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms