Protein–RNA interactions for Protein: Q9Z0Y9

Nr1h3, Oxysterols receptor LXR-alpha, mousemouse

Predictions only

Length 445 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h3Q9Z0Y9 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
Nr1h3Q9Z0Y9 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Nr1h3Q9Z0Y9 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Nr1h3Q9Z0Y9 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Nr1h3Q9Z0Y9 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC20.94■□□□□ 0.94
Nr1h3Q9Z0Y9 Mir5133-201ENSMUST00000174955 77 ntBASIC20.94■□□□□ 0.94
Nr1h3Q9Z0Y9 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC20.94■□□□□ 0.94
Nr1h3Q9Z0Y9 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC20.94■□□□□ 0.94
Nr1h3Q9Z0Y9 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Nr1h3Q9Z0Y9 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
Nr1h3Q9Z0Y9 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Nr1h3Q9Z0Y9 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Nr1h3Q9Z0Y9 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Nr1h3Q9Z0Y9 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Nr1h3Q9Z0Y9 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Nr1h3Q9Z0Y9 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Nr1h3Q9Z0Y9 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Nr1h3Q9Z0Y9 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Nr1h3Q9Z0Y9 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Nr1h3Q9Z0Y9 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Nr1h3Q9Z0Y9 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
Nr1h3Q9Z0Y9 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Nr1h3Q9Z0Y9 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Nr1h3Q9Z0Y9 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Nr1h3Q9Z0Y9 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Nr1h3Q9Z0Y9 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC20.92■□□□□ 0.94
Nr1h3Q9Z0Y9 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
Nr1h3Q9Z0Y9 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Nr1h3Q9Z0Y9 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Nr1h3Q9Z0Y9 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Nr1h3Q9Z0Y9 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Nr1h3Q9Z0Y9 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Nr1h3Q9Z0Y9 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC20.92■□□□□ 0.94
Nr1h3Q9Z0Y9 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Nr1h3Q9Z0Y9 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
Nr1h3Q9Z0Y9 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Nr1h3Q9Z0Y9 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Nr1h3Q9Z0Y9 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Nr1h3Q9Z0Y9 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC20.9■□□□□ 0.94
Nr1h3Q9Z0Y9 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Nr1h3Q9Z0Y9 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Nr1h3Q9Z0Y9 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC20.9■□□□□ 0.94
Nr1h3Q9Z0Y9 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
Nr1h3Q9Z0Y9 Gm42555-201ENSMUST00000199304 1039 ntBASIC20.9■□□□□ 0.94
Nr1h3Q9Z0Y9 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Nr1h3Q9Z0Y9 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
Nr1h3Q9Z0Y9 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
Nr1h3Q9Z0Y9 Gm42911-201ENSMUST00000199360 1630 ntBASIC20.89■□□□□ 0.94
Nr1h3Q9Z0Y9 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Nr1h3Q9Z0Y9 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Nr1h3Q9Z0Y9 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
Nr1h3Q9Z0Y9 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
Nr1h3Q9Z0Y9 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Nr1h3Q9Z0Y9 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Nr1h3Q9Z0Y9 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
Nr1h3Q9Z0Y9 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Nr1h3Q9Z0Y9 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Nr1h3Q9Z0Y9 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC20.89■□□□□ 0.93
Nr1h3Q9Z0Y9 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Nr1h3Q9Z0Y9 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Nr1h3Q9Z0Y9 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Nr1h3Q9Z0Y9 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Nr1h3Q9Z0Y9 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC20.88■□□□□ 0.93
Nr1h3Q9Z0Y9 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC20.88■□□□□ 0.93
Nr1h3Q9Z0Y9 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Nr1h3Q9Z0Y9 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Nr1h3Q9Z0Y9 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Nr1h3Q9Z0Y9 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
Nr1h3Q9Z0Y9 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Nr1h3Q9Z0Y9 Gm12441-201ENSMUST00000121806 588 ntBASIC20.87■□□□□ 0.93
Nr1h3Q9Z0Y9 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC20.87■□□□□ 0.93
Nr1h3Q9Z0Y9 Gm3807-201ENSMUST00000193520 1168 ntBASIC20.87■□□□□ 0.93
Nr1h3Q9Z0Y9 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Nr1h3Q9Z0Y9 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Nr1h3Q9Z0Y9 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Nr1h3Q9Z0Y9 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nr1h3Q9Z0Y9 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nr1h3Q9Z0Y9 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nr1h3Q9Z0Y9 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC20.86■□□□□ 0.93
Nr1h3Q9Z0Y9 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Nr1h3Q9Z0Y9 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC20.86■□□□□ 0.93
Nr1h3Q9Z0Y9 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nr1h3Q9Z0Y9 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC20.86■□□□□ 0.93
Nr1h3Q9Z0Y9 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Nr1h3Q9Z0Y9 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nr1h3Q9Z0Y9 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nr1h3Q9Z0Y9 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nr1h3Q9Z0Y9 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Nr1h3Q9Z0Y9 Gm13146-201ENSMUST00000118508 780 ntBASIC20.85■□□□□ 0.93
Nr1h3Q9Z0Y9 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC20.85■□□□□ 0.93
Nr1h3Q9Z0Y9 CT030146.1-201ENSMUST00000220919 217 ntBASIC20.85■□□□□ 0.93
Nr1h3Q9Z0Y9 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
Nr1h3Q9Z0Y9 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nr1h3Q9Z0Y9 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Nr1h3Q9Z0Y9 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nr1h3Q9Z0Y9 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Nr1h3Q9Z0Y9 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC20.84■□□□□ 0.93
Nr1h3Q9Z0Y9 AC154266.1-201ENSMUST00000223190 503 ntBASIC20.84■□□□□ 0.93
Nr1h3Q9Z0Y9 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Nr1h3Q9Z0Y9 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms