Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
Upf1Q9EPU0 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC22.34■■□□□ 1.17
Upf1Q9EPU0 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Upf1Q9EPU0 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.17
Upf1Q9EPU0 Gm42911-201ENSMUST00000199360 1630 ntBASIC22.33■■□□□ 1.17
Upf1Q9EPU0 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Upf1Q9EPU0 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC22.33■■□□□ 1.17
Upf1Q9EPU0 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC22.33■■□□□ 1.17
Upf1Q9EPU0 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Upf1Q9EPU0 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.16
Upf1Q9EPU0 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC22.33■■□□□ 1.16
Upf1Q9EPU0 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Upf1Q9EPU0 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC22.32■■□□□ 1.16
Upf1Q9EPU0 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
Upf1Q9EPU0 Gm7889-201ENSMUST00000185591 958 ntBASIC22.32■■□□□ 1.16
Upf1Q9EPU0 AC163280.1-201ENSMUST00000228194 1100 ntBASIC22.32■■□□□ 1.16
Upf1Q9EPU0 Gm7461-201ENSMUST00000058918 827 ntBASIC22.32■■□□□ 1.16
Upf1Q9EPU0 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Upf1Q9EPU0 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Upf1Q9EPU0 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Upf1Q9EPU0 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC22.31■■□□□ 1.16
Upf1Q9EPU0 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Upf1Q9EPU0 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC22.31■■□□□ 1.16
Upf1Q9EPU0 Gm11539-201ENSMUST00000119837 557 ntBASIC22.31■■□□□ 1.16
Upf1Q9EPU0 Gm13436-201ENSMUST00000120418 567 ntBASIC22.31■■□□□ 1.16
Upf1Q9EPU0 Gm15847-201ENSMUST00000121417 1065 ntBASIC22.31■■□□□ 1.16
Upf1Q9EPU0 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC22.31■■□□□ 1.16
Upf1Q9EPU0 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC22.31■■□□□ 1.16
Upf1Q9EPU0 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
Upf1Q9EPU0 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Upf1Q9EPU0 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Upf1Q9EPU0 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Upf1Q9EPU0 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Upf1Q9EPU0 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Upf1Q9EPU0 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Upf1Q9EPU0 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Upf1Q9EPU0 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
Upf1Q9EPU0 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Upf1Q9EPU0 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
Upf1Q9EPU0 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
Upf1Q9EPU0 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
Upf1Q9EPU0 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
Upf1Q9EPU0 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Upf1Q9EPU0 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Upf1Q9EPU0 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
Upf1Q9EPU0 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Upf1Q9EPU0 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
Upf1Q9EPU0 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Upf1Q9EPU0 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Upf1Q9EPU0 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Upf1Q9EPU0 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Upf1Q9EPU0 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
Upf1Q9EPU0 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Upf1Q9EPU0 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Upf1Q9EPU0 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Upf1Q9EPU0 AC130713.1-201ENSMUST00000228853 1096 ntBASIC22.28■■□□□ 1.16
Upf1Q9EPU0 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Upf1Q9EPU0 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
Upf1Q9EPU0 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Upf1Q9EPU0 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC22.28■■□□□ 1.16
Upf1Q9EPU0 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
Upf1Q9EPU0 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC22.28■■□□□ 1.16
Upf1Q9EPU0 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Upf1Q9EPU0 AA414768-201ENSMUST00000121924 1257 ntBASIC22.27■■□□□ 1.16
Upf1Q9EPU0 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
Upf1Q9EPU0 Gm44771-201ENSMUST00000206975 626 ntBASIC22.27■■□□□ 1.16
Upf1Q9EPU0 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Upf1Q9EPU0 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Upf1Q9EPU0 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Upf1Q9EPU0 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Upf1Q9EPU0 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Upf1Q9EPU0 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC22.26■■□□□ 1.15
Upf1Q9EPU0 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Upf1Q9EPU0 Gm10013-201ENSMUST00000106074 672 ntBASIC22.26■■□□□ 1.15
Upf1Q9EPU0 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC22.26■■□□□ 1.15
Upf1Q9EPU0 Arhgef4-208ENSMUST00000211073 171 ntBASIC22.26■■□□□ 1.15
Upf1Q9EPU0 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC22.26■■□□□ 1.15
Upf1Q9EPU0 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Upf1Q9EPU0 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Upf1Q9EPU0 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Upf1Q9EPU0 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
Upf1Q9EPU0 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Upf1Q9EPU0 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Upf1Q9EPU0 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Upf1Q9EPU0 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Upf1Q9EPU0 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC22.25■■□□□ 1.15
Upf1Q9EPU0 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Upf1Q9EPU0 Gm17971-201ENSMUST00000190239 806 ntBASIC22.25■■□□□ 1.15
Upf1Q9EPU0 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC22.25■■□□□ 1.15
Upf1Q9EPU0 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Upf1Q9EPU0 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Upf1Q9EPU0 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Upf1Q9EPU0 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Upf1Q9EPU0 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Upf1Q9EPU0 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Upf1Q9EPU0 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
Upf1Q9EPU0 Gm14859-201ENSMUST00000117752 357 ntBASIC22.24■■□□□ 1.15
Upf1Q9EPU0 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Upf1Q9EPU0 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Upf1Q9EPU0 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC22.24■■□□□ 1.15
Retrieved 100 of 76,532 protein–RNA pairs in 21 ms