Protein–RNA interactions for Protein: Q9DCB1

Hmgn3, High mobility group nucleosome-binding domain-containing protein 3, mousemouse

Predictions only

Length 99 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgn3Q9DCB1 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgn3Q9DCB1 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgn3Q9DCB1 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC18.12■□□□□ 0.49
Hmgn3Q9DCB1 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgn3Q9DCB1 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgn3Q9DCB1 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgn3Q9DCB1 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgn3Q9DCB1 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgn3Q9DCB1 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgn3Q9DCB1 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgn3Q9DCB1 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgn3Q9DCB1 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgn3Q9DCB1 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgn3Q9DCB1 Mir6236-201ENSMUST00000184437 123 ntBASIC18.11■□□□□ 0.49
Hmgn3Q9DCB1 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgn3Q9DCB1 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Hmgn3Q9DCB1 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC18.11■□□□□ 0.49
Hmgn3Q9DCB1 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgn3Q9DCB1 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgn3Q9DCB1 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgn3Q9DCB1 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC18.11■□□□□ 0.49
Hmgn3Q9DCB1 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgn3Q9DCB1 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgn3Q9DCB1 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgn3Q9DCB1 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgn3Q9DCB1 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgn3Q9DCB1 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgn3Q9DCB1 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgn3Q9DCB1 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgn3Q9DCB1 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Hmgn3Q9DCB1 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgn3Q9DCB1 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgn3Q9DCB1 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgn3Q9DCB1 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgn3Q9DCB1 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgn3Q9DCB1 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Hmgn3Q9DCB1 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgn3Q9DCB1 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC18.09■□□□□ 0.49
Hmgn3Q9DCB1 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
Hmgn3Q9DCB1 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgn3Q9DCB1 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
Hmgn3Q9DCB1 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgn3Q9DCB1 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC18.09■□□□□ 0.49
Hmgn3Q9DCB1 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
Hmgn3Q9DCB1 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgn3Q9DCB1 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Hmgn3Q9DCB1 Dmtn-210ENSMUST00000228824 2377 ntBASIC18.09■□□□□ 0.49
Hmgn3Q9DCB1 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgn3Q9DCB1 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Hmgn3Q9DCB1 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Hmgn3Q9DCB1 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Hmgn3Q9DCB1 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Hmgn3Q9DCB1 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
Hmgn3Q9DCB1 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Hmgn3Q9DCB1 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Hmgn3Q9DCB1 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Hmgn3Q9DCB1 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC18.08■□□□□ 0.48
Hmgn3Q9DCB1 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC18.08■□□□□ 0.48
Hmgn3Q9DCB1 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Hmgn3Q9DCB1 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Hmgn3Q9DCB1 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Hmgn3Q9DCB1 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Hmgn3Q9DCB1 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
Hmgn3Q9DCB1 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Hmgn3Q9DCB1 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Hmgn3Q9DCB1 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgn3Q9DCB1 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgn3Q9DCB1 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgn3Q9DCB1 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgn3Q9DCB1 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC18.07■□□□□ 0.48
Hmgn3Q9DCB1 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgn3Q9DCB1 Cap2-205ENSMUST00000225824 1634 ntBASIC18.07■□□□□ 0.48
Hmgn3Q9DCB1 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgn3Q9DCB1 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgn3Q9DCB1 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgn3Q9DCB1 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgn3Q9DCB1 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Hmgn3Q9DCB1 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Hmgn3Q9DCB1 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
Hmgn3Q9DCB1 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Hmgn3Q9DCB1 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Hmgn3Q9DCB1 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Hmgn3Q9DCB1 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Hmgn3Q9DCB1 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Hmgn3Q9DCB1 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Hmgn3Q9DCB1 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Hmgn3Q9DCB1 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Hmgn3Q9DCB1 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC18.05■□□□□ 0.48
Hmgn3Q9DCB1 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Hmgn3Q9DCB1 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC18.05■□□□□ 0.48
Hmgn3Q9DCB1 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Hmgn3Q9DCB1 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Hmgn3Q9DCB1 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Hmgn3Q9DCB1 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Hmgn3Q9DCB1 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Hmgn3Q9DCB1 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Hmgn3Q9DCB1 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Hmgn3Q9DCB1 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Hmgn3Q9DCB1 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Hmgn3Q9DCB1 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC18.05■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms