Protein–RNA interactions for Protein: Q99PJ2

Trim8, Probable E3 ubiquitin-protein ligase TRIM8, mousemouse

Predictions only

Length 551 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim8Q99PJ2 Gm43231-201ENSMUST00000202960 2258 ntBASIC18.84■□□□□ 0.61
Trim8Q99PJ2 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim8Q99PJ2 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trim8Q99PJ2 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trim8Q99PJ2 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC18.83■□□□□ 0.61
Trim8Q99PJ2 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim8Q99PJ2 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC18.83■□□□□ 0.6
Trim8Q99PJ2 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim8Q99PJ2 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim8Q99PJ2 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim8Q99PJ2 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim8Q99PJ2 Fam105a-203ENSMUST00000226170 3043 ntBASIC18.83■□□□□ 0.6
Trim8Q99PJ2 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim8Q99PJ2 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Trim8Q99PJ2 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim8Q99PJ2 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC18.82■□□□□ 0.6
Trim8Q99PJ2 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim8Q99PJ2 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim8Q99PJ2 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim8Q99PJ2 Gm7417-201ENSMUST00000192950 473 ntBASIC18.82■□□□□ 0.6
Trim8Q99PJ2 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Trim8Q99PJ2 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Trim8Q99PJ2 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim8Q99PJ2 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim8Q99PJ2 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim8Q99PJ2 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim8Q99PJ2 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim8Q99PJ2 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trim8Q99PJ2 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim8Q99PJ2 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim8Q99PJ2 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim8Q99PJ2 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim8Q99PJ2 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim8Q99PJ2 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim8Q99PJ2 AA386476-201ENSMUST00000098781 1665 ntBASIC18.81■□□□□ 0.6
Trim8Q99PJ2 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim8Q99PJ2 Gm45640-201ENSMUST00000210665 1896 ntBASIC18.81■□□□□ 0.6
Trim8Q99PJ2 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim8Q99PJ2 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trim8Q99PJ2 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Trim8Q99PJ2 AC126028.2-201ENSMUST00000228100 1833 ntBASIC18.8■□□□□ 0.6
Trim8Q99PJ2 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Trim8Q99PJ2 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim8Q99PJ2 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim8Q99PJ2 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim8Q99PJ2 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Trim8Q99PJ2 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Trim8Q99PJ2 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Trim8Q99PJ2 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC18.79■□□□□ 0.6
Trim8Q99PJ2 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim8Q99PJ2 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim8Q99PJ2 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Trim8Q99PJ2 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim8Q99PJ2 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Trim8Q99PJ2 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim8Q99PJ2 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim8Q99PJ2 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC18.79■□□□□ 0.6
Trim8Q99PJ2 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
Trim8Q99PJ2 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC18.79■□□□□ 0.6
Trim8Q99PJ2 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC18.79■□□□□ 0.6
Trim8Q99PJ2 Krt8-ps-201ENSMUST00000208495 945 ntBASIC18.79■□□□□ 0.6
Trim8Q99PJ2 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trim8Q99PJ2 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim8Q99PJ2 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trim8Q99PJ2 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim8Q99PJ2 Gm18688-201ENSMUST00000204695 1859 ntBASIC18.79■□□□□ 0.6
Trim8Q99PJ2 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC18.78■□□□□ 0.6
Trim8Q99PJ2 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Trim8Q99PJ2 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
Trim8Q99PJ2 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trim8Q99PJ2 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim8Q99PJ2 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC18.78■□□□□ 0.6
Trim8Q99PJ2 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim8Q99PJ2 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trim8Q99PJ2 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim8Q99PJ2 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim8Q99PJ2 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim8Q99PJ2 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim8Q99PJ2 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim8Q99PJ2 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Trim8Q99PJ2 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
Trim8Q99PJ2 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim8Q99PJ2 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim8Q99PJ2 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim8Q99PJ2 Gm37352-201ENSMUST00000193908 2181 ntBASIC18.77■□□□□ 0.6
Trim8Q99PJ2 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Trim8Q99PJ2 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Trim8Q99PJ2 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim8Q99PJ2 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim8Q99PJ2 Rncr4-201ENSMUST00000194541 2234 ntBASIC18.77■□□□□ 0.59
Trim8Q99PJ2 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trim8Q99PJ2 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trim8Q99PJ2 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trim8Q99PJ2 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
Trim8Q99PJ2 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim8Q99PJ2 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim8Q99PJ2 Gm27045-201ENSMUST00000182145 1402 ntBASIC18.76■□□□□ 0.59
Trim8Q99PJ2 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim8Q99PJ2 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC18.76■□□□□ 0.59
Trim8Q99PJ2 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 18.7 ms