Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Lsm1Q8VC85 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Lsm1Q8VC85 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Lsm1Q8VC85 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Lsm1Q8VC85 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Lsm1Q8VC85 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Lsm1Q8VC85 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Lsm1Q8VC85 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
Lsm1Q8VC85 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Lsm1Q8VC85 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Lsm1Q8VC85 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Lsm1Q8VC85 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Lsm1Q8VC85 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Lsm1Q8VC85 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Lsm1Q8VC85 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Lsm1Q8VC85 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Lsm1Q8VC85 Gm43231-201ENSMUST00000202960 2258 ntBASIC18.46■□□□□ 0.54
Lsm1Q8VC85 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
Lsm1Q8VC85 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Lsm1Q8VC85 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Lsm1Q8VC85 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Lsm1Q8VC85 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Lsm1Q8VC85 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC18.45■□□□□ 0.54
Lsm1Q8VC85 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC18.45■□□□□ 0.54
Lsm1Q8VC85 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Lsm1Q8VC85 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC18.45■□□□□ 0.54
Lsm1Q8VC85 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Lsm1Q8VC85 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Lsm1Q8VC85 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Lsm1Q8VC85 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Lsm1Q8VC85 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC18.45■□□□□ 0.54
Lsm1Q8VC85 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC18.45■□□□□ 0.54
Lsm1Q8VC85 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Lsm1Q8VC85 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Lsm1Q8VC85 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
Lsm1Q8VC85 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Lsm1Q8VC85 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Lsm1Q8VC85 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC18.44■□□□□ 0.54
Lsm1Q8VC85 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Lsm1Q8VC85 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Lsm1Q8VC85 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC18.44■□□□□ 0.54
Lsm1Q8VC85 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Lsm1Q8VC85 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Lsm1Q8VC85 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Lsm1Q8VC85 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Lsm1Q8VC85 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Lsm1Q8VC85 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Lsm1Q8VC85 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Lsm1Q8VC85 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Lsm1Q8VC85 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC18.43■□□□□ 0.54
Lsm1Q8VC85 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Lsm1Q8VC85 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC18.43■□□□□ 0.54
Lsm1Q8VC85 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Lsm1Q8VC85 Gm10571-201ENSMUST00000097869 1638 ntBASIC18.43■□□□□ 0.54
Lsm1Q8VC85 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Lsm1Q8VC85 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Lsm1Q8VC85 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Lsm1Q8VC85 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC18.43■□□□□ 0.54
Lsm1Q8VC85 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Lsm1Q8VC85 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Lsm1Q8VC85 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
Lsm1Q8VC85 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Lsm1Q8VC85 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC18.42■□□□□ 0.54
Lsm1Q8VC85 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Lsm1Q8VC85 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC18.42■□□□□ 0.54
Lsm1Q8VC85 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Lsm1Q8VC85 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Lsm1Q8VC85 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC18.42■□□□□ 0.54
Lsm1Q8VC85 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Lsm1Q8VC85 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Lsm1Q8VC85 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Lsm1Q8VC85 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Lsm1Q8VC85 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Lsm1Q8VC85 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC18.42■□□□□ 0.54
Lsm1Q8VC85 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Lsm1Q8VC85 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
Lsm1Q8VC85 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Lsm1Q8VC85 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Lsm1Q8VC85 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Lsm1Q8VC85 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Lsm1Q8VC85 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Lsm1Q8VC85 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Lsm1Q8VC85 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Lsm1Q8VC85 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Lsm1Q8VC85 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Lsm1Q8VC85 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
Lsm1Q8VC85 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Lsm1Q8VC85 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Lsm1Q8VC85 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Lsm1Q8VC85 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Lsm1Q8VC85 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Lsm1Q8VC85 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC18.4■□□□□ 0.54
Lsm1Q8VC85 Gm5576-201ENSMUST00000075809 1236 ntBASIC18.4■□□□□ 0.54
Lsm1Q8VC85 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Lsm1Q8VC85 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Lsm1Q8VC85 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Lsm1Q8VC85 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Lsm1Q8VC85 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC18.39■□□□□ 0.54
Lsm1Q8VC85 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Lsm1Q8VC85 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 19 ms