Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ccdc28bQ8CEG5 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
Ccdc28bQ8CEG5 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Ccdc28bQ8CEG5 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ccdc28bQ8CEG5 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Ccdc28bQ8CEG5 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ccdc28bQ8CEG5 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
Ccdc28bQ8CEG5 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ccdc28bQ8CEG5 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ccdc28bQ8CEG5 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ccdc28bQ8CEG5 Gm43530-201ENSMUST00000195920 274 ntBASIC19.02■□□□□ 0.64
Ccdc28bQ8CEG5 Gm5921-201ENSMUST00000075898 882 ntBASIC19.02■□□□□ 0.64
Ccdc28bQ8CEG5 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Ccdc28bQ8CEG5 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ccdc28bQ8CEG5 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC19.02■□□□□ 0.64
Ccdc28bQ8CEG5 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Ccdc28bQ8CEG5 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Ccdc28bQ8CEG5 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Ccdc28bQ8CEG5 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ccdc28bQ8CEG5 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ccdc28bQ8CEG5 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Ccdc28bQ8CEG5 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC19.01■□□□□ 0.63
Ccdc28bQ8CEG5 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ccdc28bQ8CEG5 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ccdc28bQ8CEG5 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ccdc28bQ8CEG5 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ccdc28bQ8CEG5 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ccdc28bQ8CEG5 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ccdc28bQ8CEG5 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC19.01■□□□□ 0.63
Ccdc28bQ8CEG5 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Ccdc28bQ8CEG5 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ccdc28bQ8CEG5 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ccdc28bQ8CEG5 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Ccdc28bQ8CEG5 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19■□□□□ 0.63
Ccdc28bQ8CEG5 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Ccdc28bQ8CEG5 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ccdc28bQ8CEG5 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Ccdc28bQ8CEG5 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ccdc28bQ8CEG5 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC19■□□□□ 0.63
Ccdc28bQ8CEG5 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
Ccdc28bQ8CEG5 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ccdc28bQ8CEG5 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
Ccdc28bQ8CEG5 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ccdc28bQ8CEG5 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ccdc28bQ8CEG5 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ccdc28bQ8CEG5 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC19■□□□□ 0.63
Ccdc28bQ8CEG5 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ccdc28bQ8CEG5 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ccdc28bQ8CEG5 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ccdc28bQ8CEG5 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC18.99■□□□□ 0.63
Ccdc28bQ8CEG5 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC18.99■□□□□ 0.63
Ccdc28bQ8CEG5 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ccdc28bQ8CEG5 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ccdc28bQ8CEG5 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ccdc28bQ8CEG5 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ccdc28bQ8CEG5 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ccdc28bQ8CEG5 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Ccdc28bQ8CEG5 Ddx41-204ENSMUST00000224765 2199 ntBASIC18.98■□□□□ 0.63
Ccdc28bQ8CEG5 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ccdc28bQ8CEG5 Gm40881-201ENSMUST00000223397 166 ntBASIC18.98■□□□□ 0.63
Ccdc28bQ8CEG5 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Ccdc28bQ8CEG5 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
Ccdc28bQ8CEG5 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ccdc28bQ8CEG5 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ccdc28bQ8CEG5 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ccdc28bQ8CEG5 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ccdc28bQ8CEG5 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ccdc28bQ8CEG5 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ccdc28bQ8CEG5 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc28bQ8CEG5 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
Ccdc28bQ8CEG5 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc28bQ8CEG5 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc28bQ8CEG5 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc28bQ8CEG5 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Ccdc28bQ8CEG5 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc28bQ8CEG5 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC18.97■□□□□ 0.63
Ccdc28bQ8CEG5 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc28bQ8CEG5 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc28bQ8CEG5 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc28bQ8CEG5 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC18.97■□□□□ 0.63
Ccdc28bQ8CEG5 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc28bQ8CEG5 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc28bQ8CEG5 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc28bQ8CEG5 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc28bQ8CEG5 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc28bQ8CEG5 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC18.96■□□□□ 0.63
Ccdc28bQ8CEG5 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
Ccdc28bQ8CEG5 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc28bQ8CEG5 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc28bQ8CEG5 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc28bQ8CEG5 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc28bQ8CEG5 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc28bQ8CEG5 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc28bQ8CEG5 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc28bQ8CEG5 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc28bQ8CEG5 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Ccdc28bQ8CEG5 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc28bQ8CEG5 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc28bQ8CEG5 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc28bQ8CEG5 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms