Protein–RNA interactions for Protein: Q8C120

Sh3rf3, SH3 domain-containing RING finger protein 3, mousemouse

Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf3Q8C120 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC20.08■□□□□ 0.81
Sh3rf3Q8C120 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Sh3rf3Q8C120 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC20.08■□□□□ 0.81
Sh3rf3Q8C120 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Sh3rf3Q8C120 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Sh3rf3Q8C120 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Sh3rf3Q8C120 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Sh3rf3Q8C120 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sh3rf3Q8C120 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Sh3rf3Q8C120 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Sh3rf3Q8C120 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC20.07■□□□□ 0.8
Sh3rf3Q8C120 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC20.07■□□□□ 0.8
Sh3rf3Q8C120 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Sh3rf3Q8C120 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sh3rf3Q8C120 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sh3rf3Q8C120 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sh3rf3Q8C120 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sh3rf3Q8C120 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC20.06■□□□□ 0.8
Sh3rf3Q8C120 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sh3rf3Q8C120 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sh3rf3Q8C120 Smad6-203ENSMUST00000179458 273 ntBASIC20.06■□□□□ 0.8
Sh3rf3Q8C120 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Sh3rf3Q8C120 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sh3rf3Q8C120 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sh3rf3Q8C120 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Sh3rf3Q8C120 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Sh3rf3Q8C120 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sh3rf3Q8C120 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Sh3rf3Q8C120 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
Sh3rf3Q8C120 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sh3rf3Q8C120 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
Sh3rf3Q8C120 Gm43017-201ENSMUST00000198296 752 ntBASIC20.05■□□□□ 0.8
Sh3rf3Q8C120 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC20.05■□□□□ 0.8
Sh3rf3Q8C120 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sh3rf3Q8C120 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Sh3rf3Q8C120 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Sh3rf3Q8C120 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Sh3rf3Q8C120 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sh3rf3Q8C120 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sh3rf3Q8C120 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC20.04■□□□□ 0.8
Sh3rf3Q8C120 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Sh3rf3Q8C120 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sh3rf3Q8C120 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Sh3rf3Q8C120 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sh3rf3Q8C120 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Sh3rf3Q8C120 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Sh3rf3Q8C120 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sh3rf3Q8C120 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sh3rf3Q8C120 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Sh3rf3Q8C120 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Sh3rf3Q8C120 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Sh3rf3Q8C120 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Sh3rf3Q8C120 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Sh3rf3Q8C120 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Sh3rf3Q8C120 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Sh3rf3Q8C120 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Sh3rf3Q8C120 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Sh3rf3Q8C120 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sh3rf3Q8C120 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sh3rf3Q8C120 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sh3rf3Q8C120 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sh3rf3Q8C120 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Sh3rf3Q8C120 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC20.02■□□□□ 0.79
Sh3rf3Q8C120 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Sh3rf3Q8C120 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
Sh3rf3Q8C120 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Sh3rf3Q8C120 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sh3rf3Q8C120 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Sh3rf3Q8C120 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Sh3rf3Q8C120 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sh3rf3Q8C120 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sh3rf3Q8C120 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sh3rf3Q8C120 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sh3rf3Q8C120 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sh3rf3Q8C120 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sh3rf3Q8C120 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Sh3rf3Q8C120 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC20■□□□□ 0.79
Sh3rf3Q8C120 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
Sh3rf3Q8C120 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC20■□□□□ 0.79
Sh3rf3Q8C120 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Sh3rf3Q8C120 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC20■□□□□ 0.79
Sh3rf3Q8C120 Gm10571-201ENSMUST00000097869 1638 ntBASIC20■□□□□ 0.79
Sh3rf3Q8C120 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC20■□□□□ 0.79
Sh3rf3Q8C120 Gm45640-201ENSMUST00000210665 1896 ntBASIC20■□□□□ 0.79
Sh3rf3Q8C120 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Sh3rf3Q8C120 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC19.99■□□□□ 0.79
Sh3rf3Q8C120 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sh3rf3Q8C120 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Sh3rf3Q8C120 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Sh3rf3Q8C120 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC19.99■□□□□ 0.79
Sh3rf3Q8C120 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sh3rf3Q8C120 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sh3rf3Q8C120 Gm40848-201ENSMUST00000221998 324 ntBASIC19.99■□□□□ 0.79
Sh3rf3Q8C120 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sh3rf3Q8C120 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sh3rf3Q8C120 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sh3rf3Q8C120 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Sh3rf3Q8C120 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sh3rf3Q8C120 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sh3rf3Q8C120 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms