Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
Trim56Q80VI1 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
Trim56Q80VI1 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
Trim56Q80VI1 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC22.87■■□□□ 1.25
Trim56Q80VI1 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC22.87■■□□□ 1.25
Trim56Q80VI1 Gm42642-201ENSMUST00000200683 355 ntBASIC22.87■■□□□ 1.25
Trim56Q80VI1 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC22.87■■□□□ 1.25
Trim56Q80VI1 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC22.87■■□□□ 1.25
Trim56Q80VI1 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
Trim56Q80VI1 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
Trim56Q80VI1 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Trim56Q80VI1 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Trim56Q80VI1 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC22.86■■□□□ 1.25
Trim56Q80VI1 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
Trim56Q80VI1 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
Trim56Q80VI1 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Trim56Q80VI1 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC22.85■■□□□ 1.25
Trim56Q80VI1 Gm45640-201ENSMUST00000210665 1896 ntBASIC22.85■■□□□ 1.25
Trim56Q80VI1 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
Trim56Q80VI1 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
Trim56Q80VI1 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
Trim56Q80VI1 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC22.85■■□□□ 1.25
Trim56Q80VI1 Gm38205-201ENSMUST00000192243 258 ntBASIC22.85■■□□□ 1.25
Trim56Q80VI1 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC22.85■■□□□ 1.25
Trim56Q80VI1 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Trim56Q80VI1 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC22.85■■□□□ 1.25
Trim56Q80VI1 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Trim56Q80VI1 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Trim56Q80VI1 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Trim56Q80VI1 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC22.84■■□□□ 1.25
Trim56Q80VI1 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC22.84■■□□□ 1.25
Trim56Q80VI1 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
Trim56Q80VI1 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC22.84■■□□□ 1.25
Trim56Q80VI1 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC22.84■■□□□ 1.25
Trim56Q80VI1 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Trim56Q80VI1 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC22.84■■□□□ 1.25
Trim56Q80VI1 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Trim56Q80VI1 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Trim56Q80VI1 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC22.83■■□□□ 1.25
Trim56Q80VI1 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
Trim56Q80VI1 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Trim56Q80VI1 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
Trim56Q80VI1 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC22.83■■□□□ 1.25
Trim56Q80VI1 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC22.83■■□□□ 1.25
Trim56Q80VI1 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
Trim56Q80VI1 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
Trim56Q80VI1 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
Trim56Q80VI1 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
Trim56Q80VI1 Hsf1-204ENSMUST00000226872 2104 ntBASIC22.82■■□□□ 1.24
Trim56Q80VI1 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Trim56Q80VI1 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Trim56Q80VI1 Gm10849-201ENSMUST00000100397 618 ntBASIC22.82■■□□□ 1.24
Trim56Q80VI1 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Trim56Q80VI1 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Trim56Q80VI1 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC22.82■■□□□ 1.24
Trim56Q80VI1 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
Trim56Q80VI1 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
Trim56Q80VI1 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Trim56Q80VI1 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC22.81■■□□□ 1.24
Trim56Q80VI1 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
Trim56Q80VI1 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
Trim56Q80VI1 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC22.81■■□□□ 1.24
Trim56Q80VI1 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Trim56Q80VI1 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
Trim56Q80VI1 Gm13234-201ENSMUST00000120010 747 ntBASIC22.81■■□□□ 1.24
Trim56Q80VI1 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC22.81■■□□□ 1.24
Trim56Q80VI1 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
Trim56Q80VI1 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Trim56Q80VI1 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC22.81■■□□□ 1.24
Trim56Q80VI1 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Trim56Q80VI1 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC22.8■■□□□ 1.24
Trim56Q80VI1 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Trim56Q80VI1 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Trim56Q80VI1 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC22.8■■□□□ 1.24
Trim56Q80VI1 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Trim56Q80VI1 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC22.8■■□□□ 1.24
Trim56Q80VI1 Gm37352-201ENSMUST00000193908 2181 ntBASIC22.8■■□□□ 1.24
Trim56Q80VI1 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Trim56Q80VI1 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC22.8■■□□□ 1.24
Trim56Q80VI1 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Trim56Q80VI1 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC22.79■■□□□ 1.24
Trim56Q80VI1 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC22.79■■□□□ 1.24
Trim56Q80VI1 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
Trim56Q80VI1 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
Trim56Q80VI1 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC22.79■■□□□ 1.24
Trim56Q80VI1 Gm42778-201ENSMUST00000199644 553 ntBASIC22.79■■□□□ 1.24
Trim56Q80VI1 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
Trim56Q80VI1 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Trim56Q80VI1 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
Trim56Q80VI1 Gm20634-201ENSMUST00000090779 2956 ntBASIC22.79■■□□□ 1.24
Trim56Q80VI1 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Trim56Q80VI1 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC22.78■■□□□ 1.24
Trim56Q80VI1 Gm43545-201ENSMUST00000196765 2779 ntBASIC22.78■■□□□ 1.24
Trim56Q80VI1 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC22.78■■□□□ 1.24
Trim56Q80VI1 Gm7860-201ENSMUST00000121190 879 ntBASIC22.78■■□□□ 1.24
Trim56Q80VI1 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
Trim56Q80VI1 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Trim56Q80VI1 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC22.78■■□□□ 1.24
Trim56Q80VI1 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC22.78■■□□□ 1.24
Trim56Q80VI1 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms