Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Col11a1Q61245 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Col11a1Q61245 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Col11a1Q61245 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
Col11a1Q61245 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC22.01■■□□□ 1.11
Col11a1Q61245 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC22.01■■□□□ 1.11
Col11a1Q61245 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC22.01■■□□□ 1.11
Col11a1Q61245 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
Col11a1Q61245 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
Col11a1Q61245 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Col11a1Q61245 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
Col11a1Q61245 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Col11a1Q61245 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Col11a1Q61245 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Col11a1Q61245 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Col11a1Q61245 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
Col11a1Q61245 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC21.99■■□□□ 1.11
Col11a1Q61245 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Col11a1Q61245 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Col11a1Q61245 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Col11a1Q61245 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
Col11a1Q61245 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Col11a1Q61245 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
Col11a1Q61245 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Col11a1Q61245 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC21.97■■□□□ 1.11
Col11a1Q61245 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
Col11a1Q61245 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
Col11a1Q61245 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Col11a1Q61245 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
Col11a1Q61245 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Col11a1Q61245 Gm6802-201ENSMUST00000167843 1983 ntBASIC21.97■■□□□ 1.11
Col11a1Q61245 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
Col11a1Q61245 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
Col11a1Q61245 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
Col11a1Q61245 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC21.96■■□□□ 1.11
Col11a1Q61245 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Col11a1Q61245 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
Col11a1Q61245 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Col11a1Q61245 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
Col11a1Q61245 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
Col11a1Q61245 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Col11a1Q61245 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
Col11a1Q61245 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Col11a1Q61245 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC21.96■■□□□ 1.11
Col11a1Q61245 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Col11a1Q61245 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC21.96■■□□□ 1.11
Col11a1Q61245 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Col11a1Q61245 AL672049.1-201ENSMUST00000197943 91 ntBASIC21.96■■□□□ 1.11
Col11a1Q61245 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
Col11a1Q61245 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
Col11a1Q61245 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Col11a1Q61245 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Col11a1Q61245 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Col11a1Q61245 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Col11a1Q61245 Cdkn3-203ENSMUST00000227149 1952 ntBASIC21.95■■□□□ 1.1
Col11a1Q61245 Gm15043-201ENSMUST00000118843 1543 ntBASIC21.95■■□□□ 1.1
Col11a1Q61245 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Col11a1Q61245 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC21.95■■□□□ 1.1
Col11a1Q61245 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Col11a1Q61245 Mir1199-201ENSMUST00000117015 119 ntBASIC21.94■■□□□ 1.1
Col11a1Q61245 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Col11a1Q61245 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC21.94■■□□□ 1.1
Col11a1Q61245 AC153881.2-201ENSMUST00000214877 204 ntBASIC21.94■■□□□ 1.1
Col11a1Q61245 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Col11a1Q61245 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Col11a1Q61245 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
Col11a1Q61245 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Col11a1Q61245 Gm11249-201ENSMUST00000117071 859 ntBASIC21.94■■□□□ 1.1
Col11a1Q61245 Gm11643-201ENSMUST00000119578 864 ntBASIC21.94■■□□□ 1.1
Col11a1Q61245 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Col11a1Q61245 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC21.94■■□□□ 1.1
Col11a1Q61245 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Col11a1Q61245 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC21.93■■□□□ 1.1
Col11a1Q61245 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
Col11a1Q61245 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Col11a1Q61245 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Col11a1Q61245 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC21.93■■□□□ 1.1
Col11a1Q61245 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Col11a1Q61245 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
Col11a1Q61245 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Col11a1Q61245 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
Col11a1Q61245 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Col11a1Q61245 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC21.92■■□□□ 1.1
Col11a1Q61245 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
Col11a1Q61245 Gm2399-201ENSMUST00000104944 225 ntBASIC21.92■■□□□ 1.1
Col11a1Q61245 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Col11a1Q61245 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC21.92■■□□□ 1.1
Col11a1Q61245 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Col11a1Q61245 AC154649.1-201ENSMUST00000227392 384 ntBASIC21.92■■□□□ 1.1
Col11a1Q61245 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Col11a1Q61245 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Col11a1Q61245 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Col11a1Q61245 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Col11a1Q61245 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
Col11a1Q61245 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
Col11a1Q61245 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Col11a1Q61245 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Col11a1Q61245 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Col11a1Q61245 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Col11a1Q61245 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Retrieved 100 of 76,532 protein–RNA pairs in 17 ms