Protein–RNA interactions for Protein: Q5R1B6

Trav8d-2, T cell receptor alpha variable 8D-2 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8d-2Q5R1B6 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trav8d-2Q5R1B6 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trav8d-2Q5R1B6 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
Trav8d-2Q5R1B6 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trav8d-2Q5R1B6 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trav8d-2Q5R1B6 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Trav8d-2Q5R1B6 Gm2559-201ENSMUST00000201323 363 ntBASIC18.93■□□□□ 0.62
Trav8d-2Q5R1B6 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC18.93■□□□□ 0.62
Trav8d-2Q5R1B6 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trav8d-2Q5R1B6 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trav8d-2Q5R1B6 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Trav8d-2Q5R1B6 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC18.93■□□□□ 0.62
Trav8d-2Q5R1B6 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trav8d-2Q5R1B6 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC18.92■□□□□ 0.62
Trav8d-2Q5R1B6 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav8d-2Q5R1B6 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav8d-2Q5R1B6 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Trav8d-2Q5R1B6 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav8d-2Q5R1B6 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Trav8d-2Q5R1B6 Gm27032-201ENSMUST00000183124 1116 ntBASIC18.92■□□□□ 0.62
Trav8d-2Q5R1B6 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav8d-2Q5R1B6 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav8d-2Q5R1B6 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav8d-2Q5R1B6 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Trav8d-2Q5R1B6 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Trav8d-2Q5R1B6 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Trav8d-2Q5R1B6 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trav8d-2Q5R1B6 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Trav8d-2Q5R1B6 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Trav8d-2Q5R1B6 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Trav8d-2Q5R1B6 Cdkn3-203ENSMUST00000227149 1952 ntBASIC18.91■□□□□ 0.62
Trav8d-2Q5R1B6 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trav8d-2Q5R1B6 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Trav8d-2Q5R1B6 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Trav8d-2Q5R1B6 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Trav8d-2Q5R1B6 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Trav8d-2Q5R1B6 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav8d-2Q5R1B6 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav8d-2Q5R1B6 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
Trav8d-2Q5R1B6 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav8d-2Q5R1B6 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
Trav8d-2Q5R1B6 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav8d-2Q5R1B6 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav8d-2Q5R1B6 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav8d-2Q5R1B6 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trav8d-2Q5R1B6 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Trav8d-2Q5R1B6 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Trav8d-2Q5R1B6 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trav8d-2Q5R1B6 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trav8d-2Q5R1B6 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Trav8d-2Q5R1B6 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Trav8d-2Q5R1B6 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
Trav8d-2Q5R1B6 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC18.89■□□□□ 0.61
Trav8d-2Q5R1B6 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC18.89■□□□□ 0.61
Trav8d-2Q5R1B6 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Trav8d-2Q5R1B6 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trav8d-2Q5R1B6 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trav8d-2Q5R1B6 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Trav8d-2Q5R1B6 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trav8d-2Q5R1B6 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trav8d-2Q5R1B6 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trav8d-2Q5R1B6 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trav8d-2Q5R1B6 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC18.88■□□□□ 0.61
Trav8d-2Q5R1B6 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trav8d-2Q5R1B6 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trav8d-2Q5R1B6 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Trav8d-2Q5R1B6 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trav8d-2Q5R1B6 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trav8d-2Q5R1B6 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trav8d-2Q5R1B6 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trav8d-2Q5R1B6 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
Trav8d-2Q5R1B6 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Trav8d-2Q5R1B6 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC18.87■□□□□ 0.61
Trav8d-2Q5R1B6 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC18.87■□□□□ 0.61
Trav8d-2Q5R1B6 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Trav8d-2Q5R1B6 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Trav8d-2Q5R1B6 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trav8d-2Q5R1B6 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trav8d-2Q5R1B6 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC18.86■□□□□ 0.61
Trav8d-2Q5R1B6 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC18.86■□□□□ 0.61
Trav8d-2Q5R1B6 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Trav8d-2Q5R1B6 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC18.86■□□□□ 0.61
Trav8d-2Q5R1B6 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Trav8d-2Q5R1B6 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC18.86■□□□□ 0.61
Trav8d-2Q5R1B6 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trav8d-2Q5R1B6 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trav8d-2Q5R1B6 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trav8d-2Q5R1B6 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC18.85■□□□□ 0.61
Trav8d-2Q5R1B6 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trav8d-2Q5R1B6 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
Trav8d-2Q5R1B6 AC154649.1-201ENSMUST00000227392 384 ntBASIC18.85■□□□□ 0.61
Trav8d-2Q5R1B6 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trav8d-2Q5R1B6 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trav8d-2Q5R1B6 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Trav8d-2Q5R1B6 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Trav8d-2Q5R1B6 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trav8d-2Q5R1B6 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC18.85■□□□□ 0.61
Trav8d-2Q5R1B6 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Trav8d-2Q5R1B6 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trav8d-2Q5R1B6 Gm26766-202ENSMUST00000227544 2347 ntBASIC18.85■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms