Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim40Q3UWA4 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim40Q3UWA4 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim40Q3UWA4 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC18.06■□□□□ 0.48
Trim40Q3UWA4 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC18.06■□□□□ 0.48
Trim40Q3UWA4 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim40Q3UWA4 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC18.06■□□□□ 0.48
Trim40Q3UWA4 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC18.06■□□□□ 0.48
Trim40Q3UWA4 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC18.06■□□□□ 0.48
Trim40Q3UWA4 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim40Q3UWA4 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC18.06■□□□□ 0.48
Trim40Q3UWA4 Grk6-206ENSMUST00000224995 2971 ntBASIC18.06■□□□□ 0.48
Trim40Q3UWA4 Gm18688-201ENSMUST00000204695 1859 ntBASIC18.05■□□□□ 0.48
Trim40Q3UWA4 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim40Q3UWA4 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim40Q3UWA4 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Trim40Q3UWA4 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC18.05■□□□□ 0.48
Trim40Q3UWA4 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC18.05■□□□□ 0.48
Trim40Q3UWA4 Rncr4-201ENSMUST00000194541 2234 ntBASIC18.05■□□□□ 0.48
Trim40Q3UWA4 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Trim40Q3UWA4 Mir6236-201ENSMUST00000184437 123 ntBASIC18.05■□□□□ 0.48
Trim40Q3UWA4 Gm10232-201ENSMUST00000089221 720 ntBASIC18.05■□□□□ 0.48
Trim40Q3UWA4 Gm5953-201ENSMUST00000220644 2616 ntBASIC18.05■□□□□ 0.48
Trim40Q3UWA4 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim40Q3UWA4 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Trim40Q3UWA4 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim40Q3UWA4 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.48
Trim40Q3UWA4 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim40Q3UWA4 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim40Q3UWA4 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Trim40Q3UWA4 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Trim40Q3UWA4 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim40Q3UWA4 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim40Q3UWA4 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Trim40Q3UWA4 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim40Q3UWA4 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim40Q3UWA4 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC18.04■□□□□ 0.48
Trim40Q3UWA4 Gm7143-201ENSMUST00000222811 859 ntBASIC18.04■□□□□ 0.48
Trim40Q3UWA4 AC124603.1-201ENSMUST00000223843 308 ntBASIC18.04■□□□□ 0.48
Trim40Q3UWA4 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim40Q3UWA4 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim40Q3UWA4 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC18.04■□□□□ 0.48
Trim40Q3UWA4 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim40Q3UWA4 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim40Q3UWA4 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Trim40Q3UWA4 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim40Q3UWA4 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC18.04■□□□□ 0.48
Trim40Q3UWA4 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Trim40Q3UWA4 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC18.03■□□□□ 0.48
Trim40Q3UWA4 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim40Q3UWA4 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim40Q3UWA4 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Trim40Q3UWA4 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim40Q3UWA4 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Trim40Q3UWA4 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC18.03■□□□□ 0.48
Trim40Q3UWA4 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim40Q3UWA4 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim40Q3UWA4 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Trim40Q3UWA4 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC18.03■□□□□ 0.48
Trim40Q3UWA4 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
Trim40Q3UWA4 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC18.03■□□□□ 0.48
Trim40Q3UWA4 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Trim40Q3UWA4 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC18.02■□□□□ 0.48
Trim40Q3UWA4 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim40Q3UWA4 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC18.02■□□□□ 0.47
Trim40Q3UWA4 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Trim40Q3UWA4 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Trim40Q3UWA4 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim40Q3UWA4 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim40Q3UWA4 Gm43182-201ENSMUST00000199476 2528 ntBASIC18.01■□□□□ 0.47
Trim40Q3UWA4 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim40Q3UWA4 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim40Q3UWA4 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim40Q3UWA4 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim40Q3UWA4 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Trim40Q3UWA4 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim40Q3UWA4 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim40Q3UWA4 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim40Q3UWA4 Gm45640-201ENSMUST00000210665 1896 ntBASIC18.01■□□□□ 0.47
Trim40Q3UWA4 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim40Q3UWA4 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Trim40Q3UWA4 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Trim40Q3UWA4 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim40Q3UWA4 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC18■□□□□ 0.47
Trim40Q3UWA4 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim40Q3UWA4 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim40Q3UWA4 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim40Q3UWA4 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim40Q3UWA4 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC18■□□□□ 0.47
Trim40Q3UWA4 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Trim40Q3UWA4 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC18■□□□□ 0.47
Trim40Q3UWA4 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Trim40Q3UWA4 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC18■□□□□ 0.47
Trim40Q3UWA4 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Trim40Q3UWA4 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim40Q3UWA4 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Trim40Q3UWA4 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim40Q3UWA4 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim40Q3UWA4 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC18■□□□□ 0.47
Trim40Q3UWA4 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms