Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col28a1Q2UY11 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col28a1Q2UY11 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col28a1Q2UY11 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC18.63■□□□□ 0.57
Col28a1Q2UY11 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Col28a1Q2UY11 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col28a1Q2UY11 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col28a1Q2UY11 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Col28a1Q2UY11 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col28a1Q2UY11 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC18.62■□□□□ 0.57
Col28a1Q2UY11 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col28a1Q2UY11 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col28a1Q2UY11 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col28a1Q2UY11 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col28a1Q2UY11 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col28a1Q2UY11 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
Col28a1Q2UY11 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col28a1Q2UY11 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col28a1Q2UY11 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col28a1Q2UY11 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col28a1Q2UY11 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Col28a1Q2UY11 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col28a1Q2UY11 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Col28a1Q2UY11 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col28a1Q2UY11 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Col28a1Q2UY11 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col28a1Q2UY11 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col28a1Q2UY11 Golgb1-201ENSMUST00000023534 498 ntBASIC18.61■□□□□ 0.57
Col28a1Q2UY11 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Col28a1Q2UY11 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col28a1Q2UY11 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col28a1Q2UY11 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Col28a1Q2UY11 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col28a1Q2UY11 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Col28a1Q2UY11 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col28a1Q2UY11 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col28a1Q2UY11 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col28a1Q2UY11 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col28a1Q2UY11 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col28a1Q2UY11 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col28a1Q2UY11 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Col28a1Q2UY11 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Col28a1Q2UY11 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Col28a1Q2UY11 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Col28a1Q2UY11 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col28a1Q2UY11 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col28a1Q2UY11 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Col28a1Q2UY11 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Col28a1Q2UY11 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC18.6■□□□□ 0.57
Col28a1Q2UY11 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col28a1Q2UY11 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col28a1Q2UY11 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col28a1Q2UY11 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Col28a1Q2UY11 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
Col28a1Q2UY11 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col28a1Q2UY11 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col28a1Q2UY11 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col28a1Q2UY11 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Col28a1Q2UY11 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col28a1Q2UY11 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC18.59■□□□□ 0.57
Col28a1Q2UY11 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC18.59■□□□□ 0.57
Col28a1Q2UY11 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC18.59■□□□□ 0.57
Col28a1Q2UY11 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC18.59■□□□□ 0.57
Col28a1Q2UY11 Gm20100-201ENSMUST00000209418 2272 ntBASIC18.59■□□□□ 0.57
Col28a1Q2UY11 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col28a1Q2UY11 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col28a1Q2UY11 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC18.59■□□□□ 0.57
Col28a1Q2UY11 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col28a1Q2UY11 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col28a1Q2UY11 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col28a1Q2UY11 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col28a1Q2UY11 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col28a1Q2UY11 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col28a1Q2UY11 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
Col28a1Q2UY11 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col28a1Q2UY11 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col28a1Q2UY11 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col28a1Q2UY11 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC18.58■□□□□ 0.56
Col28a1Q2UY11 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC18.58■□□□□ 0.56
Col28a1Q2UY11 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC18.58■□□□□ 0.56
Col28a1Q2UY11 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Col28a1Q2UY11 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col28a1Q2UY11 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col28a1Q2UY11 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col28a1Q2UY11 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC18.58■□□□□ 0.56
Col28a1Q2UY11 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col28a1Q2UY11 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col28a1Q2UY11 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col28a1Q2UY11 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.56
Col28a1Q2UY11 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Col28a1Q2UY11 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col28a1Q2UY11 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col28a1Q2UY11 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC18.57■□□□□ 0.56
Col28a1Q2UY11 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC18.57■□□□□ 0.56
Col28a1Q2UY11 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col28a1Q2UY11 AC124603.1-201ENSMUST00000223843 308 ntBASIC18.57■□□□□ 0.56
Col28a1Q2UY11 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC18.57■□□□□ 0.56
Col28a1Q2UY11 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col28a1Q2UY11 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Col28a1Q2UY11 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC18.57■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 178 ms