Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC21.14■□□□□ 0.97
Hmgb1P63158 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Hmgb1P63158 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Hmgb1P63158 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Hmgb1P63158 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
Hmgb1P63158 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Hmgb1P63158 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Hmgb1P63158 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC21.13■□□□□ 0.97
Hmgb1P63158 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Hmgb1P63158 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Hmgb1P63158 Gm10571-201ENSMUST00000097869 1638 ntBASIC21.13■□□□□ 0.97
Hmgb1P63158 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Hmgb1P63158 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Hmgb1P63158 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Hmgb1P63158 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Hmgb1P63158 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC21.12■□□□□ 0.97
Hmgb1P63158 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
Hmgb1P63158 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Hmgb1P63158 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Hmgb1P63158 AC126028.2-201ENSMUST00000228100 1833 ntBASIC21.11■□□□□ 0.97
Hmgb1P63158 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Hmgb1P63158 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Hmgb1P63158 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Hmgb1P63158 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Hmgb1P63158 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Hmgb1P63158 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Hmgb1P63158 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Hmgb1P63158 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Hmgb1P63158 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Hmgb1P63158 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Hmgb1P63158 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Hmgb1P63158 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Hmgb1P63158 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Hmgb1P63158 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Hmgb1P63158 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Hmgb1P63158 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Hmgb1P63158 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Hmgb1P63158 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Hmgb1P63158 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Hmgb1P63158 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Hmgb1P63158 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC21.09■□□□□ 0.97
Hmgb1P63158 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Hmgb1P63158 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC21.09■□□□□ 0.97
Hmgb1P63158 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC21.09■□□□□ 0.97
Hmgb1P63158 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Hmgb1P63158 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Hmgb1P63158 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Hmgb1P63158 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
Hmgb1P63158 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Hmgb1P63158 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Hmgb1P63158 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
Hmgb1P63158 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
Hmgb1P63158 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC21.08■□□□□ 0.97
Hmgb1P63158 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Hmgb1P63158 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Hmgb1P63158 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
Hmgb1P63158 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Hmgb1P63158 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Hmgb1P63158 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC21.08■□□□□ 0.97
Hmgb1P63158 Gm7160-202ENSMUST00000188519 1027 ntBASIC21.08■□□□□ 0.97
Hmgb1P63158 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Hmgb1P63158 Spcs1-204ENSMUST00000226782 949 ntBASIC21.08■□□□□ 0.97
Hmgb1P63158 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC21.08■□□□□ 0.96
Hmgb1P63158 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Hmgb1P63158 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Hmgb1P63158 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Hmgb1P63158 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Hmgb1P63158 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Hmgb1P63158 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Hmgb1P63158 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Hmgb1P63158 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Hmgb1P63158 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Hmgb1P63158 Gm32699-201ENSMUST00000221728 1988 ntBASIC21.06■□□□□ 0.96
Hmgb1P63158 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Hmgb1P63158 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Hmgb1P63158 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Hmgb1P63158 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Hmgb1P63158 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Hmgb1P63158 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Hmgb1P63158 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Hmgb1P63158 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Hmgb1P63158 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC21.06■□□□□ 0.96
Hmgb1P63158 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC21.06■□□□□ 0.96
Hmgb1P63158 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Hmgb1P63158 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Hmgb1P63158 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Hmgb1P63158 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Hmgb1P63158 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Hmgb1P63158 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Hmgb1P63158 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC21.05■□□□□ 0.96
Hmgb1P63158 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Hmgb1P63158 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
Hmgb1P63158 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC21.05■□□□□ 0.96
Hmgb1P63158 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Hmgb1P63158 Gm43137-201ENSMUST00000198052 594 ntBASIC21.05■□□□□ 0.96
Hmgb1P63158 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Hmgb1P63158 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Hmgb1P63158 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Hmgb1P63158 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Hmgb1P63158 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC21.05■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms