Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm5784-201ENSMUST00000179344 2478 ntBASIC16■□□□□ 0.15
Hmgb3O54879 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC16■□□□□ 0.15
Hmgb3O54879 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC16■□□□□ 0.15
Hmgb3O54879 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC16■□□□□ 0.15
Hmgb3O54879 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC16■□□□□ 0.15
Hmgb3O54879 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC16■□□□□ 0.15
Hmgb3O54879 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Hmgb3O54879 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Hmgb3O54879 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Hmgb3O54879 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Hmgb3O54879 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC16■□□□□ 0.15
Hmgb3O54879 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
Hmgb3O54879 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Hmgb3O54879 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
Hmgb3O54879 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Hmgb3O54879 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Hmgb3O54879 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Hmgb3O54879 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Hmgb3O54879 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Hmgb3O54879 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Hmgb3O54879 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Hmgb3O54879 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Hmgb3O54879 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC15.99■□□□□ 0.15
Hmgb3O54879 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Hmgb3O54879 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
Hmgb3O54879 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Hmgb3O54879 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Hmgb3O54879 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Hmgb3O54879 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Hmgb3O54879 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Hmgb3O54879 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Hmgb3O54879 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Hmgb3O54879 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Hmgb3O54879 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Hmgb3O54879 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Hmgb3O54879 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Hmgb3O54879 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Hmgb3O54879 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Hmgb3O54879 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Hmgb3O54879 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Hmgb3O54879 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
Hmgb3O54879 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC15.97■□□□□ 0.15
Hmgb3O54879 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC15.97■□□□□ 0.15
Hmgb3O54879 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Hmgb3O54879 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Hmgb3O54879 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Hmgb3O54879 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC15.97■□□□□ 0.15
Hmgb3O54879 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Hmgb3O54879 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
Hmgb3O54879 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Hmgb3O54879 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
Hmgb3O54879 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
Hmgb3O54879 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Hmgb3O54879 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Hmgb3O54879 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Hmgb3O54879 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Hmgb3O54879 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Hmgb3O54879 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
Hmgb3O54879 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Hmgb3O54879 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Hmgb3O54879 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC15.96■□□□□ 0.15
Hmgb3O54879 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Hmgb3O54879 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Hmgb3O54879 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Hmgb3O54879 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
Hmgb3O54879 Ptprs-211ENSMUST00000223859 5588 ntBASIC15.96■□□□□ 0.14
Hmgb3O54879 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Hmgb3O54879 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Hmgb3O54879 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Hmgb3O54879 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Hmgb3O54879 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Hmgb3O54879 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC15.95■□□□□ 0.14
Hmgb3O54879 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Hmgb3O54879 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
Hmgb3O54879 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Hmgb3O54879 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Hmgb3O54879 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC15.95■□□□□ 0.14
Hmgb3O54879 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Hmgb3O54879 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
Hmgb3O54879 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Hmgb3O54879 Fam105a-203ENSMUST00000226170 3043 ntBASIC15.95■□□□□ 0.14
Hmgb3O54879 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Hmgb3O54879 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Hmgb3O54879 Gm6802-201ENSMUST00000167843 1983 ntBASIC15.95■□□□□ 0.14
Hmgb3O54879 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Hmgb3O54879 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
Hmgb3O54879 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Hmgb3O54879 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
Hmgb3O54879 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
Hmgb3O54879 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Hmgb3O54879 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC15.94■□□□□ 0.14
Hmgb3O54879 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
Hmgb3O54879 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
Hmgb3O54879 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Hmgb3O54879 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Hmgb3O54879 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Hmgb3O54879 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Hmgb3O54879 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
Hmgb3O54879 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Hmgb3O54879 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms