Protein–RNA interactions for Protein: A0A0B4J1K1

Trav4-3, T cell receptor alpha variable 4-3 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav4-3A0A0B4J1K1 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trav4-3A0A0B4J1K1 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trav4-3A0A0B4J1K1 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trav4-3A0A0B4J1K1 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trav4-3A0A0B4J1K1 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trav4-3A0A0B4J1K1 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trav4-3A0A0B4J1K1 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trav4-3A0A0B4J1K1 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC13.17□□□□□ -0.3
Trav4-3A0A0B4J1K1 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trav4-3A0A0B4J1K1 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trav4-3A0A0B4J1K1 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trav4-3A0A0B4J1K1 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trav4-3A0A0B4J1K1 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trav4-3A0A0B4J1K1 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trav4-3A0A0B4J1K1 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trav4-3A0A0B4J1K1 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC13.17□□□□□ -0.3
Trav4-3A0A0B4J1K1 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trav4-3A0A0B4J1K1 Gm38342-201ENSMUST00000195710 2980 ntBASIC13.17□□□□□ -0.3
Trav4-3A0A0B4J1K1 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trav4-3A0A0B4J1K1 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trav4-3A0A0B4J1K1 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trav4-3A0A0B4J1K1 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC13.16□□□□□ -0.3
Trav4-3A0A0B4J1K1 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trav4-3A0A0B4J1K1 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trav4-3A0A0B4J1K1 Gm11687-201ENSMUST00000118911 886 ntBASIC13.16□□□□□ -0.3
Trav4-3A0A0B4J1K1 Mir6236-201ENSMUST00000184437 123 ntBASIC13.16□□□□□ -0.3
Trav4-3A0A0B4J1K1 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trav4-3A0A0B4J1K1 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trav4-3A0A0B4J1K1 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trav4-3A0A0B4J1K1 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trav4-3A0A0B4J1K1 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trav4-3A0A0B4J1K1 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trav4-3A0A0B4J1K1 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trav4-3A0A0B4J1K1 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trav4-3A0A0B4J1K1 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trav4-3A0A0B4J1K1 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Trav4-3A0A0B4J1K1 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trav4-3A0A0B4J1K1 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Trav4-3A0A0B4J1K1 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trav4-3A0A0B4J1K1 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trav4-3A0A0B4J1K1 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trav4-3A0A0B4J1K1 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Trav4-3A0A0B4J1K1 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trav4-3A0A0B4J1K1 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Trav4-3A0A0B4J1K1 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trav4-3A0A0B4J1K1 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trav4-3A0A0B4J1K1 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Trav4-3A0A0B4J1K1 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trav4-3A0A0B4J1K1 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trav4-3A0A0B4J1K1 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC13.15□□□□□ -0.3
Trav4-3A0A0B4J1K1 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trav4-3A0A0B4J1K1 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC13.15□□□□□ -0.3
Trav4-3A0A0B4J1K1 Rarb-207ENSMUST00000225921 2756 ntBASIC13.15□□□□□ -0.31
Trav4-3A0A0B4J1K1 Gm18688-201ENSMUST00000204695 1859 ntBASIC13.14□□□□□ -0.31
Trav4-3A0A0B4J1K1 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Trav4-3A0A0B4J1K1 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav4-3A0A0B4J1K1 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC13.14□□□□□ -0.31
Trav4-3A0A0B4J1K1 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav4-3A0A0B4J1K1 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Trav4-3A0A0B4J1K1 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav4-3A0A0B4J1K1 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Trav4-3A0A0B4J1K1 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav4-3A0A0B4J1K1 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav4-3A0A0B4J1K1 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC13.14□□□□□ -0.31
Trav4-3A0A0B4J1K1 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav4-3A0A0B4J1K1 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav4-3A0A0B4J1K1 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav4-3A0A0B4J1K1 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav4-3A0A0B4J1K1 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
Trav4-3A0A0B4J1K1 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Trav4-3A0A0B4J1K1 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC13.14□□□□□ -0.31
Trav4-3A0A0B4J1K1 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trav4-3A0A0B4J1K1 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trav4-3A0A0B4J1K1 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Trav4-3A0A0B4J1K1 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trav4-3A0A0B4J1K1 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Trav4-3A0A0B4J1K1 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trav4-3A0A0B4J1K1 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC13.13□□□□□ -0.31
Trav4-3A0A0B4J1K1 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC13.13□□□□□ -0.31
Trav4-3A0A0B4J1K1 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trav4-3A0A0B4J1K1 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trav4-3A0A0B4J1K1 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Trav4-3A0A0B4J1K1 Fam105a-203ENSMUST00000226170 3043 ntBASIC13.13□□□□□ -0.31
Trav4-3A0A0B4J1K1 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trav4-3A0A0B4J1K1 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC13.12□□□□□ -0.31
Trav4-3A0A0B4J1K1 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trav4-3A0A0B4J1K1 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trav4-3A0A0B4J1K1 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Trav4-3A0A0B4J1K1 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Trav4-3A0A0B4J1K1 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trav4-3A0A0B4J1K1 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trav4-3A0A0B4J1K1 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Trav4-3A0A0B4J1K1 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC13.12□□□□□ -0.31
Trav4-3A0A0B4J1K1 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trav4-3A0A0B4J1K1 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Trav4-3A0A0B4J1K1 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Trav4-3A0A0B4J1K1 Gm45606-201ENSMUST00000209836 2795 ntBASIC13.12□□□□□ -0.31
Trav4-3A0A0B4J1K1 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC13.12□□□□□ -0.31
Trav4-3A0A0B4J1K1 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trav4-3A0A0B4J1K1 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms