Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Prpf40aQ9R1C7 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Prpf40aQ9R1C7 Gm12251-201ENSMUST00000117893 792 ntBASIC21.25■□□□□ 0.99
Prpf40aQ9R1C7 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC21.25■□□□□ 0.99
Prpf40aQ9R1C7 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC21.25■□□□□ 0.99
Prpf40aQ9R1C7 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Prpf40aQ9R1C7 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Prpf40aQ9R1C7 Gm6139-201ENSMUST00000079261 882 ntBASIC21.25■□□□□ 0.99
Prpf40aQ9R1C7 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Prpf40aQ9R1C7 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC21.25■□□□□ 0.99
Prpf40aQ9R1C7 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Prpf40aQ9R1C7 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC21.24■□□□□ 0.99
Prpf40aQ9R1C7 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
Prpf40aQ9R1C7 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Prpf40aQ9R1C7 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC21.24■□□□□ 0.99
Prpf40aQ9R1C7 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
Prpf40aQ9R1C7 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Prpf40aQ9R1C7 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Prpf40aQ9R1C7 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Prpf40aQ9R1C7 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC21.24■□□□□ 0.99
Prpf40aQ9R1C7 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Prpf40aQ9R1C7 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC21.24■□□□□ 0.99
Prpf40aQ9R1C7 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Prpf40aQ9R1C7 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Prpf40aQ9R1C7 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Prpf40aQ9R1C7 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
Prpf40aQ9R1C7 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Prpf40aQ9R1C7 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Prpf40aQ9R1C7 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC21.23■□□□□ 0.99
Prpf40aQ9R1C7 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Prpf40aQ9R1C7 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Prpf40aQ9R1C7 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Prpf40aQ9R1C7 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Prpf40aQ9R1C7 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Prpf40aQ9R1C7 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Prpf40aQ9R1C7 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Prpf40aQ9R1C7 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Prpf40aQ9R1C7 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Prpf40aQ9R1C7 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Prpf40aQ9R1C7 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Prpf40aQ9R1C7 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Prpf40aQ9R1C7 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Prpf40aQ9R1C7 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Prpf40aQ9R1C7 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC21.22■□□□□ 0.99
Prpf40aQ9R1C7 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Prpf40aQ9R1C7 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Prpf40aQ9R1C7 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Prpf40aQ9R1C7 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Prpf40aQ9R1C7 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Prpf40aQ9R1C7 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Prpf40aQ9R1C7 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Prpf40aQ9R1C7 Cdkn3-203ENSMUST00000227149 1952 ntBASIC21.21■□□□□ 0.99
Prpf40aQ9R1C7 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC21.21■□□□□ 0.99
Prpf40aQ9R1C7 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Prpf40aQ9R1C7 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC21.21■□□□□ 0.99
Prpf40aQ9R1C7 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Prpf40aQ9R1C7 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC21.21■□□□□ 0.99
Prpf40aQ9R1C7 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Prpf40aQ9R1C7 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC21.21■□□□□ 0.99
Prpf40aQ9R1C7 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Prpf40aQ9R1C7 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Prpf40aQ9R1C7 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Prpf40aQ9R1C7 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
Prpf40aQ9R1C7 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Prpf40aQ9R1C7 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Prpf40aQ9R1C7 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Prpf40aQ9R1C7 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Prpf40aQ9R1C7 Gm43173-201ENSMUST00000202246 593 ntBASIC21.2■□□□□ 0.98
Prpf40aQ9R1C7 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Prpf40aQ9R1C7 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Prpf40aQ9R1C7 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Prpf40aQ9R1C7 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Prpf40aQ9R1C7 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Prpf40aQ9R1C7 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Prpf40aQ9R1C7 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC21.2■□□□□ 0.98
Prpf40aQ9R1C7 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Prpf40aQ9R1C7 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Prpf40aQ9R1C7 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Prpf40aQ9R1C7 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Prpf40aQ9R1C7 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Prpf40aQ9R1C7 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Prpf40aQ9R1C7 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC21.19■□□□□ 0.98
Prpf40aQ9R1C7 Flvcr1-202ENSMUST00000191946 1216 ntBASIC21.19■□□□□ 0.98
Prpf40aQ9R1C7 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Prpf40aQ9R1C7 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC21.19■□□□□ 0.98
Prpf40aQ9R1C7 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Prpf40aQ9R1C7 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Prpf40aQ9R1C7 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Prpf40aQ9R1C7 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Prpf40aQ9R1C7 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Prpf40aQ9R1C7 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Prpf40aQ9R1C7 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Prpf40aQ9R1C7 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Prpf40aQ9R1C7 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
Prpf40aQ9R1C7 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Prpf40aQ9R1C7 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Prpf40aQ9R1C7 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Prpf40aQ9R1C7 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Prpf40aQ9R1C7 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Prpf40aQ9R1C7 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 13.3 ms