Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clp1Q99LI9 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clp1Q99LI9 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC20.6■□□□□ 0.89
Clp1Q99LI9 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clp1Q99LI9 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clp1Q99LI9 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clp1Q99LI9 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC20.59■□□□□ 0.89
Clp1Q99LI9 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Clp1Q99LI9 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC20.59■□□□□ 0.89
Clp1Q99LI9 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC20.59■□□□□ 0.89
Clp1Q99LI9 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Clp1Q99LI9 Rab3c-203ENSMUST00000224180 967 ntBASIC20.59■□□□□ 0.89
Clp1Q99LI9 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Clp1Q99LI9 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Clp1Q99LI9 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC20.59■□□□□ 0.89
Clp1Q99LI9 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Clp1Q99LI9 Gm15043-201ENSMUST00000118843 1543 ntBASIC20.58■□□□□ 0.89
Clp1Q99LI9 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Clp1Q99LI9 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Clp1Q99LI9 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
Clp1Q99LI9 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Clp1Q99LI9 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Clp1Q99LI9 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Clp1Q99LI9 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Clp1Q99LI9 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Clp1Q99LI9 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Clp1Q99LI9 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
Clp1Q99LI9 Cdkn3-203ENSMUST00000227149 1952 ntBASIC20.57■□□□□ 0.88
Clp1Q99LI9 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Clp1Q99LI9 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Clp1Q99LI9 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Clp1Q99LI9 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Clp1Q99LI9 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Clp1Q99LI9 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Clp1Q99LI9 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC20.56■□□□□ 0.88
Clp1Q99LI9 Gm44672-201ENSMUST00000206944 1098 ntBASIC20.56■□□□□ 0.88
Clp1Q99LI9 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Clp1Q99LI9 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Clp1Q99LI9 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Clp1Q99LI9 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Clp1Q99LI9 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Clp1Q99LI9 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC20.55■□□□□ 0.88
Clp1Q99LI9 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Clp1Q99LI9 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Clp1Q99LI9 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Clp1Q99LI9 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Clp1Q99LI9 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Clp1Q99LI9 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Clp1Q99LI9 Gm7860-201ENSMUST00000121190 879 ntBASIC20.55■□□□□ 0.88
Clp1Q99LI9 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC20.55■□□□□ 0.88
Clp1Q99LI9 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Clp1Q99LI9 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Clp1Q99LI9 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Clp1Q99LI9 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Clp1Q99LI9 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Clp1Q99LI9 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Clp1Q99LI9 Mir7071-201ENSMUST00000184847 69 ntBASIC20.54■□□□□ 0.88
Clp1Q99LI9 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
Clp1Q99LI9 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Clp1Q99LI9 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Clp1Q99LI9 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Clp1Q99LI9 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Clp1Q99LI9 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Clp1Q99LI9 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Clp1Q99LI9 Gm37563-201ENSMUST00000192580 1513 ntBASIC20.53■□□□□ 0.88
Clp1Q99LI9 AC131586.2-201ENSMUST00000228370 1512 ntBASIC20.53■□□□□ 0.88
Clp1Q99LI9 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
Clp1Q99LI9 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC20.53■□□□□ 0.88
Clp1Q99LI9 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Clp1Q99LI9 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
Clp1Q99LI9 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Clp1Q99LI9 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Clp1Q99LI9 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC20.52■□□□□ 0.88
Clp1Q99LI9 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Clp1Q99LI9 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Clp1Q99LI9 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Clp1Q99LI9 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Clp1Q99LI9 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Clp1Q99LI9 Gm13181-201ENSMUST00000120117 1069 ntBASIC20.52■□□□□ 0.88
Clp1Q99LI9 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC20.52■□□□□ 0.88
Clp1Q99LI9 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Clp1Q99LI9 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
Clp1Q99LI9 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Clp1Q99LI9 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Clp1Q99LI9 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Clp1Q99LI9 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Clp1Q99LI9 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Clp1Q99LI9 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC20.51■□□□□ 0.87
Clp1Q99LI9 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Clp1Q99LI9 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Clp1Q99LI9 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC20.51■□□□□ 0.87
Clp1Q99LI9 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Clp1Q99LI9 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Clp1Q99LI9 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Clp1Q99LI9 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
Clp1Q99LI9 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC20.5■□□□□ 0.87
Clp1Q99LI9 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Clp1Q99LI9 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC20.5■□□□□ 0.87
Clp1Q99LI9 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Clp1Q99LI9 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms