Protein–RNA interactions for Protein: Q8R1F9

Rpp40, Ribonuclease P protein subunit p40, mousemouse

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpp40Q8R1F9 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Rpp40Q8R1F9 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Rpp40Q8R1F9 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Rpp40Q8R1F9 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC20.83■□□□□ 0.93
Rpp40Q8R1F9 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Rpp40Q8R1F9 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Rpp40Q8R1F9 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Rpp40Q8R1F9 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Rpp40Q8R1F9 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Rpp40Q8R1F9 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
Rpp40Q8R1F9 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC20.82■□□□□ 0.92
Rpp40Q8R1F9 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC20.82■□□□□ 0.92
Rpp40Q8R1F9 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC20.82■□□□□ 0.92
Rpp40Q8R1F9 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
Rpp40Q8R1F9 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rpp40Q8R1F9 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Rpp40Q8R1F9 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC20.81■□□□□ 0.92
Rpp40Q8R1F9 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rpp40Q8R1F9 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rpp40Q8R1F9 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rpp40Q8R1F9 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
Rpp40Q8R1F9 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Rpp40Q8R1F9 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rpp40Q8R1F9 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Rpp40Q8R1F9 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Rpp40Q8R1F9 Reep4-203ENSMUST00000226563 1444 ntBASIC20.8■□□□□ 0.92
Rpp40Q8R1F9 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC20.8■□□□□ 0.92
Rpp40Q8R1F9 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Rpp40Q8R1F9 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rpp40Q8R1F9 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rpp40Q8R1F9 Gm26571-201ENSMUST00000181399 666 ntBASIC20.8■□□□□ 0.92
Rpp40Q8R1F9 Gm42642-201ENSMUST00000200683 355 ntBASIC20.8■□□□□ 0.92
Rpp40Q8R1F9 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rpp40Q8R1F9 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rpp40Q8R1F9 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rpp40Q8R1F9 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rpp40Q8R1F9 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rpp40Q8R1F9 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rpp40Q8R1F9 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rpp40Q8R1F9 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Rpp40Q8R1F9 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Rpp40Q8R1F9 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Rpp40Q8R1F9 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Rpp40Q8R1F9 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Rpp40Q8R1F9 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Rpp40Q8R1F9 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC20.79■□□□□ 0.92
Rpp40Q8R1F9 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Rpp40Q8R1F9 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Rpp40Q8R1F9 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Rpp40Q8R1F9 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Rpp40Q8R1F9 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rpp40Q8R1F9 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rpp40Q8R1F9 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC20.78■□□□□ 0.92
Rpp40Q8R1F9 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rpp40Q8R1F9 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rpp40Q8R1F9 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rpp40Q8R1F9 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Rpp40Q8R1F9 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rpp40Q8R1F9 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rpp40Q8R1F9 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC20.77■□□□□ 0.92
Rpp40Q8R1F9 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rpp40Q8R1F9 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rpp40Q8R1F9 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC20.77■□□□□ 0.92
Rpp40Q8R1F9 Gm10033-202ENSMUST00000211874 928 ntBASIC20.77■□□□□ 0.92
Rpp40Q8R1F9 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Rpp40Q8R1F9 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rpp40Q8R1F9 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rpp40Q8R1F9 Gm42778-201ENSMUST00000199644 553 ntBASIC20.76■□□□□ 0.91
Rpp40Q8R1F9 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rpp40Q8R1F9 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rpp40Q8R1F9 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rpp40Q8R1F9 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Rpp40Q8R1F9 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rpp40Q8R1F9 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rpp40Q8R1F9 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC20.76■□□□□ 0.91
Rpp40Q8R1F9 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC20.75■□□□□ 0.91
Rpp40Q8R1F9 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rpp40Q8R1F9 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rpp40Q8R1F9 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rpp40Q8R1F9 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rpp40Q8R1F9 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Rpp40Q8R1F9 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Rpp40Q8R1F9 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC20.75■□□□□ 0.91
Rpp40Q8R1F9 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Rpp40Q8R1F9 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC20.75■□□□□ 0.91
Rpp40Q8R1F9 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Rpp40Q8R1F9 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Rpp40Q8R1F9 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rpp40Q8R1F9 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rpp40Q8R1F9 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rpp40Q8R1F9 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Rpp40Q8R1F9 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Rpp40Q8R1F9 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC20.74■□□□□ 0.91
Rpp40Q8R1F9 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Rpp40Q8R1F9 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rpp40Q8R1F9 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rpp40Q8R1F9 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Rpp40Q8R1F9 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC20.73■□□□□ 0.91
Rpp40Q8R1F9 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC20.73■□□□□ 0.91
Rpp40Q8R1F9 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 60.7 ms