Protein–RNA interactions for Protein: Q8C120

Sh3rf3, SH3 domain-containing RING finger protein 3, mousemouse

Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf3Q8C120 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC20.17■□□□□ 0.82
Sh3rf3Q8C120 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Sh3rf3Q8C120 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Sh3rf3Q8C120 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Sh3rf3Q8C120 Serp2-204ENSMUST00000228055 705 ntBASIC20.17■□□□□ 0.82
Sh3rf3Q8C120 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Sh3rf3Q8C120 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Sh3rf3Q8C120 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Sh3rf3Q8C120 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Sh3rf3Q8C120 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Sh3rf3Q8C120 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Sh3rf3Q8C120 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Sh3rf3Q8C120 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Sh3rf3Q8C120 AC165080.2-201ENSMUST00000217491 1530 ntBASIC20.16■□□□□ 0.82
Sh3rf3Q8C120 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Sh3rf3Q8C120 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC20.16■□□□□ 0.82
Sh3rf3Q8C120 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Sh3rf3Q8C120 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Sh3rf3Q8C120 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Sh3rf3Q8C120 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Sh3rf3Q8C120 Gm43173-201ENSMUST00000202246 593 ntBASIC20.15■□□□□ 0.82
Sh3rf3Q8C120 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Sh3rf3Q8C120 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Sh3rf3Q8C120 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Sh3rf3Q8C120 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Sh3rf3Q8C120 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Sh3rf3Q8C120 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Sh3rf3Q8C120 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
Sh3rf3Q8C120 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Sh3rf3Q8C120 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC20.14■□□□□ 0.81
Sh3rf3Q8C120 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Sh3rf3Q8C120 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Sh3rf3Q8C120 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC20.14■□□□□ 0.81
Sh3rf3Q8C120 Gm42911-201ENSMUST00000199360 1630 ntBASIC20.14■□□□□ 0.81
Sh3rf3Q8C120 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Sh3rf3Q8C120 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Sh3rf3Q8C120 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC20.14■□□□□ 0.81
Sh3rf3Q8C120 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Sh3rf3Q8C120 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Sh3rf3Q8C120 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC20.14■□□□□ 0.81
Sh3rf3Q8C120 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Sh3rf3Q8C120 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC20.14■□□□□ 0.81
Sh3rf3Q8C120 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Sh3rf3Q8C120 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
Sh3rf3Q8C120 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Sh3rf3Q8C120 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sh3rf3Q8C120 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Sh3rf3Q8C120 Gm8493-201ENSMUST00000196881 489 ntBASIC20.13■□□□□ 0.81
Sh3rf3Q8C120 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sh3rf3Q8C120 AC154266.1-201ENSMUST00000223190 503 ntBASIC20.13■□□□□ 0.81
Sh3rf3Q8C120 Gm6139-201ENSMUST00000079261 882 ntBASIC20.13■□□□□ 0.81
Sh3rf3Q8C120 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sh3rf3Q8C120 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sh3rf3Q8C120 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Sh3rf3Q8C120 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC20.12■□□□□ 0.81
Sh3rf3Q8C120 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Sh3rf3Q8C120 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Sh3rf3Q8C120 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Sh3rf3Q8C120 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC20.12■□□□□ 0.81
Sh3rf3Q8C120 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC20.12■□□□□ 0.81
Sh3rf3Q8C120 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Sh3rf3Q8C120 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Sh3rf3Q8C120 Wdr70-203ENSMUST00000227371 1130 ntBASIC20.12■□□□□ 0.81
Sh3rf3Q8C120 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Sh3rf3Q8C120 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Sh3rf3Q8C120 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Sh3rf3Q8C120 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Sh3rf3Q8C120 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sh3rf3Q8C120 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
Sh3rf3Q8C120 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC20.11■□□□□ 0.81
Sh3rf3Q8C120 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sh3rf3Q8C120 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sh3rf3Q8C120 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Sh3rf3Q8C120 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Sh3rf3Q8C120 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Sh3rf3Q8C120 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Sh3rf3Q8C120 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Sh3rf3Q8C120 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Sh3rf3Q8C120 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Sh3rf3Q8C120 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC20.1■□□□□ 0.81
Sh3rf3Q8C120 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Sh3rf3Q8C120 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC20.1■□□□□ 0.81
Sh3rf3Q8C120 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Sh3rf3Q8C120 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Sh3rf3Q8C120 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Sh3rf3Q8C120 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Sh3rf3Q8C120 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Sh3rf3Q8C120 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Sh3rf3Q8C120 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Sh3rf3Q8C120 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Sh3rf3Q8C120 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC20.09■□□□□ 0.81
Sh3rf3Q8C120 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Sh3rf3Q8C120 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Sh3rf3Q8C120 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Sh3rf3Q8C120 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Sh3rf3Q8C120 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Sh3rf3Q8C120 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Sh3rf3Q8C120 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
Sh3rf3Q8C120 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Sh3rf3Q8C120 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 44.5 ms