Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Rnf220Q6PDX6 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rnf220Q6PDX6 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Rnf220Q6PDX6 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rnf220Q6PDX6 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC18.28■□□□□ 0.52
Rnf220Q6PDX6 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rnf220Q6PDX6 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC18.28■□□□□ 0.52
Rnf220Q6PDX6 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Rnf220Q6PDX6 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rnf220Q6PDX6 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rnf220Q6PDX6 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rnf220Q6PDX6 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Rnf220Q6PDX6 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Rnf220Q6PDX6 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC18.27■□□□□ 0.52
Rnf220Q6PDX6 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rnf220Q6PDX6 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Rnf220Q6PDX6 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Rnf220Q6PDX6 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Rnf220Q6PDX6 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
Rnf220Q6PDX6 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rnf220Q6PDX6 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rnf220Q6PDX6 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC18.26■□□□□ 0.51
Rnf220Q6PDX6 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Rnf220Q6PDX6 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Rnf220Q6PDX6 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
Rnf220Q6PDX6 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rnf220Q6PDX6 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC18.26■□□□□ 0.51
Rnf220Q6PDX6 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rnf220Q6PDX6 AC126028.2-201ENSMUST00000228100 1833 ntBASIC18.26■□□□□ 0.51
Rnf220Q6PDX6 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rnf220Q6PDX6 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rnf220Q6PDX6 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Rnf220Q6PDX6 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Rnf220Q6PDX6 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rnf220Q6PDX6 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
Rnf220Q6PDX6 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Rnf220Q6PDX6 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC18.25■□□□□ 0.51
Rnf220Q6PDX6 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Rnf220Q6PDX6 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rnf220Q6PDX6 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rnf220Q6PDX6 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rnf220Q6PDX6 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Rnf220Q6PDX6 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rnf220Q6PDX6 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rnf220Q6PDX6 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rnf220Q6PDX6 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Rnf220Q6PDX6 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rnf220Q6PDX6 Gm43702-201ENSMUST00000198772 2546 ntBASIC18.24■□□□□ 0.51
Rnf220Q6PDX6 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
Rnf220Q6PDX6 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Rnf220Q6PDX6 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
Rnf220Q6PDX6 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rnf220Q6PDX6 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rnf220Q6PDX6 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rnf220Q6PDX6 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rnf220Q6PDX6 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC18.24■□□□□ 0.51
Rnf220Q6PDX6 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf220Q6PDX6 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Rnf220Q6PDX6 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf220Q6PDX6 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf220Q6PDX6 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf220Q6PDX6 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
Rnf220Q6PDX6 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf220Q6PDX6 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf220Q6PDX6 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf220Q6PDX6 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf220Q6PDX6 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC18.23■□□□□ 0.51
Rnf220Q6PDX6 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Rnf220Q6PDX6 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf220Q6PDX6 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf220Q6PDX6 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Rnf220Q6PDX6 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf220Q6PDX6 Dapk1-207ENSMUST00000226059 5009 ntBASIC18.23■□□□□ 0.51
Rnf220Q6PDX6 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf220Q6PDX6 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf220Q6PDX6 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf220Q6PDX6 Dmtn-207ENSMUST00000228001 2437 ntBASIC18.22■□□□□ 0.51
Rnf220Q6PDX6 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf220Q6PDX6 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Rnf220Q6PDX6 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC18.22■□□□□ 0.51
Rnf220Q6PDX6 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf220Q6PDX6 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC18.22■□□□□ 0.51
Rnf220Q6PDX6 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf220Q6PDX6 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf220Q6PDX6 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC18.22■□□□□ 0.51
Rnf220Q6PDX6 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf220Q6PDX6 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf220Q6PDX6 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf220Q6PDX6 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Rnf220Q6PDX6 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Rnf220Q6PDX6 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rnf220Q6PDX6 Gm45444-201ENSMUST00000211394 898 ntBASIC18.21■□□□□ 0.51
Rnf220Q6PDX6 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC18.21■□□□□ 0.51
Rnf220Q6PDX6 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
Rnf220Q6PDX6 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rnf220Q6PDX6 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
Rnf220Q6PDX6 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rnf220Q6PDX6 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rnf220Q6PDX6 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rnf220Q6PDX6 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 24.7 ms