Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usf1Q61069 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usf1Q61069 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Usf1Q61069 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Usf1Q61069 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usf1Q61069 Gm7977-201ENSMUST00000193787 748 ntBASIC17.69■□□□□ 0.42
Usf1Q61069 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usf1Q61069 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usf1Q61069 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usf1Q61069 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Usf1Q61069 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usf1Q61069 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usf1Q61069 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usf1Q61069 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usf1Q61069 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usf1Q61069 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usf1Q61069 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC17.68■□□□□ 0.42
Usf1Q61069 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usf1Q61069 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Usf1Q61069 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Usf1Q61069 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC17.68■□□□□ 0.42
Usf1Q61069 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usf1Q61069 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Usf1Q61069 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Usf1Q61069 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC17.68■□□□□ 0.42
Usf1Q61069 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Usf1Q61069 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usf1Q61069 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC17.67■□□□□ 0.42
Usf1Q61069 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Usf1Q61069 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Usf1Q61069 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Usf1Q61069 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
Usf1Q61069 Gm26524-201ENSMUST00000192339 390 ntBASIC17.67■□□□□ 0.42
Usf1Q61069 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Usf1Q61069 AC154266.1-201ENSMUST00000223190 503 ntBASIC17.67■□□□□ 0.42
Usf1Q61069 Rab3c-203ENSMUST00000224180 967 ntBASIC17.67■□□□□ 0.42
Usf1Q61069 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Usf1Q61069 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Usf1Q61069 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usf1Q61069 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usf1Q61069 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usf1Q61069 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usf1Q61069 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usf1Q61069 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Usf1Q61069 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usf1Q61069 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC17.66■□□□□ 0.42
Usf1Q61069 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC17.66■□□□□ 0.42
Usf1Q61069 AC135963.1-201ENSMUST00000211640 717 ntBASIC17.66■□□□□ 0.42
Usf1Q61069 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC17.66■□□□□ 0.42
Usf1Q61069 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Usf1Q61069 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Usf1Q61069 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usf1Q61069 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usf1Q61069 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usf1Q61069 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC17.66■□□□□ 0.42
Usf1Q61069 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usf1Q61069 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usf1Q61069 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC17.65■□□□□ 0.42
Usf1Q61069 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usf1Q61069 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usf1Q61069 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Usf1Q61069 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC17.65■□□□□ 0.42
Usf1Q61069 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Usf1Q61069 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC17.65■□□□□ 0.42
Usf1Q61069 Gm29241-201ENSMUST00000189260 1096 ntBASIC17.65■□□□□ 0.42
Usf1Q61069 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usf1Q61069 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usf1Q61069 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usf1Q61069 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
Usf1Q61069 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usf1Q61069 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Usf1Q61069 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usf1Q61069 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usf1Q61069 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.42
Usf1Q61069 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC17.64■□□□□ 0.42
Usf1Q61069 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usf1Q61069 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Usf1Q61069 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Usf1Q61069 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usf1Q61069 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Usf1Q61069 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usf1Q61069 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Usf1Q61069 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Usf1Q61069 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usf1Q61069 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usf1Q61069 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Usf1Q61069 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Usf1Q61069 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usf1Q61069 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Usf1Q61069 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usf1Q61069 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Usf1Q61069 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Usf1Q61069 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Usf1Q61069 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usf1Q61069 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC17.63■□□□□ 0.41
Usf1Q61069 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Usf1Q61069 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usf1Q61069 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Usf1Q61069 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Usf1Q61069 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 52.7 ms