Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Nr1h4Q60641 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Nr1h4Q60641 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Nr1h4Q60641 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Nr1h4Q60641 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
Nr1h4Q60641 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Nr1h4Q60641 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Nr1h4Q60641 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Nr1h4Q60641 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC18.42■□□□□ 0.54
Nr1h4Q60641 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC18.42■□□□□ 0.54
Nr1h4Q60641 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
Nr1h4Q60641 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Nr1h4Q60641 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Nr1h4Q60641 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Nr1h4Q60641 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC18.41■□□□□ 0.54
Nr1h4Q60641 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC18.41■□□□□ 0.54
Nr1h4Q60641 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Nr1h4Q60641 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Nr1h4Q60641 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Nr1h4Q60641 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Nr1h4Q60641 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Nr1h4Q60641 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Nr1h4Q60641 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Nr1h4Q60641 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Nr1h4Q60641 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
Nr1h4Q60641 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Nr1h4Q60641 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
Nr1h4Q60641 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Nr1h4Q60641 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Nr1h4Q60641 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Nr1h4Q60641 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Nr1h4Q60641 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Nr1h4Q60641 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Nr1h4Q60641 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Nr1h4Q60641 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Nr1h4Q60641 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Nr1h4Q60641 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Nr1h4Q60641 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Nr1h4Q60641 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nr1h4Q60641 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Nr1h4Q60641 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Nr1h4Q60641 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC18.39■□□□□ 0.53
Nr1h4Q60641 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nr1h4Q60641 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC18.39■□□□□ 0.53
Nr1h4Q60641 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nr1h4Q60641 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Nr1h4Q60641 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nr1h4Q60641 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nr1h4Q60641 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nr1h4Q60641 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Nr1h4Q60641 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nr1h4Q60641 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Nr1h4Q60641 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Nr1h4Q60641 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nr1h4Q60641 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nr1h4Q60641 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nr1h4Q60641 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nr1h4Q60641 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nr1h4Q60641 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nr1h4Q60641 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nr1h4Q60641 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC18.38■□□□□ 0.53
Nr1h4Q60641 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
Nr1h4Q60641 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nr1h4Q60641 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nr1h4Q60641 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC18.37■□□□□ 0.53
Nr1h4Q60641 Gm42501-201ENSMUST00000200220 1026 ntBASIC18.37■□□□□ 0.53
Nr1h4Q60641 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC18.37■□□□□ 0.53
Nr1h4Q60641 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nr1h4Q60641 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Nr1h4Q60641 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nr1h4Q60641 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nr1h4Q60641 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Nr1h4Q60641 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Nr1h4Q60641 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nr1h4Q60641 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nr1h4Q60641 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Nr1h4Q60641 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
Nr1h4Q60641 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nr1h4Q60641 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nr1h4Q60641 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC18.36■□□□□ 0.53
Nr1h4Q60641 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Nr1h4Q60641 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nr1h4Q60641 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nr1h4Q60641 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC18.35■□□□□ 0.53
Nr1h4Q60641 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nr1h4Q60641 AA386476-201ENSMUST00000098781 1665 ntBASIC18.35■□□□□ 0.53
Nr1h4Q60641 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Nr1h4Q60641 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nr1h4Q60641 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nr1h4Q60641 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nr1h4Q60641 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nr1h4Q60641 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC18.35■□□□□ 0.53
Nr1h4Q60641 Gm7417-201ENSMUST00000192950 473 ntBASIC18.35■□□□□ 0.53
Nr1h4Q60641 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nr1h4Q60641 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Nr1h4Q60641 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nr1h4Q60641 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC18.34■□□□□ 0.53
Nr1h4Q60641 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nr1h4Q60641 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC18.34■□□□□ 0.53
Nr1h4Q60641 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 16.1 ms