Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col28a1Q2UY11 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
Col28a1Q2UY11 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC18.71■□□□□ 0.58
Col28a1Q2UY11 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC18.7■□□□□ 0.58
Col28a1Q2UY11 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col28a1Q2UY11 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col28a1Q2UY11 Gm12821-201ENSMUST00000120022 600 ntBASIC18.7■□□□□ 0.58
Col28a1Q2UY11 Mir6236-201ENSMUST00000184437 123 ntBASIC18.7■□□□□ 0.58
Col28a1Q2UY11 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col28a1Q2UY11 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Col28a1Q2UY11 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col28a1Q2UY11 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Col28a1Q2UY11 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col28a1Q2UY11 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Col28a1Q2UY11 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col28a1Q2UY11 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col28a1Q2UY11 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Col28a1Q2UY11 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Col28a1Q2UY11 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col28a1Q2UY11 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col28a1Q2UY11 Gm27454-201ENSMUST00000185090 204 ntBASIC18.69■□□□□ 0.58
Col28a1Q2UY11 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col28a1Q2UY11 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col28a1Q2UY11 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Col28a1Q2UY11 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col28a1Q2UY11 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col28a1Q2UY11 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col28a1Q2UY11 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col28a1Q2UY11 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC18.69■□□□□ 0.58
Col28a1Q2UY11 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col28a1Q2UY11 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC18.69■□□□□ 0.58
Col28a1Q2UY11 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
Col28a1Q2UY11 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
Col28a1Q2UY11 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col28a1Q2UY11 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col28a1Q2UY11 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Col28a1Q2UY11 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col28a1Q2UY11 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col28a1Q2UY11 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col28a1Q2UY11 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col28a1Q2UY11 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col28a1Q2UY11 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col28a1Q2UY11 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Col28a1Q2UY11 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col28a1Q2UY11 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col28a1Q2UY11 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col28a1Q2UY11 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC18.67■□□□□ 0.58
Col28a1Q2UY11 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col28a1Q2UY11 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col28a1Q2UY11 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
Col28a1Q2UY11 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col28a1Q2UY11 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Col28a1Q2UY11 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Col28a1Q2UY11 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col28a1Q2UY11 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col28a1Q2UY11 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Col28a1Q2UY11 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col28a1Q2UY11 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Col28a1Q2UY11 Gm45417-201ENSMUST00000209533 758 ntBASIC18.66■□□□□ 0.58
Col28a1Q2UY11 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col28a1Q2UY11 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col28a1Q2UY11 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col28a1Q2UY11 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col28a1Q2UY11 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Col28a1Q2UY11 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col28a1Q2UY11 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Col28a1Q2UY11 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col28a1Q2UY11 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col28a1Q2UY11 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
Col28a1Q2UY11 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Col28a1Q2UY11 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col28a1Q2UY11 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col28a1Q2UY11 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC18.65■□□□□ 0.58
Col28a1Q2UY11 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC18.65■□□□□ 0.58
Col28a1Q2UY11 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
Col28a1Q2UY11 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col28a1Q2UY11 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col28a1Q2UY11 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col28a1Q2UY11 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col28a1Q2UY11 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col28a1Q2UY11 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Col28a1Q2UY11 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Col28a1Q2UY11 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Col28a1Q2UY11 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
Col28a1Q2UY11 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Col28a1Q2UY11 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col28a1Q2UY11 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
Col28a1Q2UY11 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
Col28a1Q2UY11 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col28a1Q2UY11 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col28a1Q2UY11 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Col28a1Q2UY11 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Col28a1Q2UY11 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col28a1Q2UY11 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Col28a1Q2UY11 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col28a1Q2UY11 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC18.63■□□□□ 0.57
Col28a1Q2UY11 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col28a1Q2UY11 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC18.63■□□□□ 0.57
Col28a1Q2UY11 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Col28a1Q2UY11 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC18.63■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms