Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
RaraP11416 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RaraP11416 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC20.94■□□□□ 0.94
RaraP11416 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RaraP11416 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
RaraP11416 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
RaraP11416 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC20.94■□□□□ 0.94
RaraP11416 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RaraP11416 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RaraP11416 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
RaraP11416 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
RaraP11416 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RaraP11416 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RaraP11416 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RaraP11416 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
RaraP11416 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC20.93■□□□□ 0.94
RaraP11416 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RaraP11416 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
RaraP11416 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RaraP11416 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RaraP11416 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RaraP11416 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
RaraP11416 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RaraP11416 AC126028.2-201ENSMUST00000228100 1833 ntBASIC20.92■□□□□ 0.94
RaraP11416 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RaraP11416 Gm37352-201ENSMUST00000193908 2181 ntBASIC20.92■□□□□ 0.94
RaraP11416 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC20.92■□□□□ 0.94
RaraP11416 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC20.92■□□□□ 0.94
RaraP11416 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
RaraP11416 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RaraP11416 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RaraP11416 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
RaraP11416 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC20.91■□□□□ 0.94
RaraP11416 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
RaraP11416 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC20.91■□□□□ 0.94
RaraP11416 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RaraP11416 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
RaraP11416 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC20.91■□□□□ 0.94
RaraP11416 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RaraP11416 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
RaraP11416 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RaraP11416 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RaraP11416 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RaraP11416 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
RaraP11416 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
RaraP11416 Gm12922-201ENSMUST00000120626 809 ntBASIC20.9■□□□□ 0.94
RaraP11416 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
RaraP11416 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC20.9■□□□□ 0.94
RaraP11416 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC20.9■□□□□ 0.94
RaraP11416 Serp2-204ENSMUST00000228055 705 ntBASIC20.9■□□□□ 0.94
RaraP11416 Gm18688-201ENSMUST00000204695 1859 ntBASIC20.9■□□□□ 0.94
RaraP11416 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
RaraP11416 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RaraP11416 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RaraP11416 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RaraP11416 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RaraP11416 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RaraP11416 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RaraP11416 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
RaraP11416 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
RaraP11416 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RaraP11416 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RaraP11416 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RaraP11416 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
RaraP11416 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC20.88■□□□□ 0.93
RaraP11416 AC124603.1-201ENSMUST00000223843 308 ntBASIC20.88■□□□□ 0.93
RaraP11416 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RaraP11416 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
RaraP11416 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
RaraP11416 Gm32699-201ENSMUST00000221728 1988 ntBASIC20.88■□□□□ 0.93
RaraP11416 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
RaraP11416 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RaraP11416 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RaraP11416 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
RaraP11416 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC20.87■□□□□ 0.93
RaraP11416 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
RaraP11416 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RaraP11416 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC20.87■□□□□ 0.93
RaraP11416 Gm42911-201ENSMUST00000199360 1630 ntBASIC20.87■□□□□ 0.93
RaraP11416 Gm43231-201ENSMUST00000202960 2258 ntBASIC20.87■□□□□ 0.93
RaraP11416 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RaraP11416 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC20.87■□□□□ 0.93
RaraP11416 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RaraP11416 Gm10209-201ENSMUST00000203397 1607 ntBASIC20.86■□□□□ 0.93
RaraP11416 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RaraP11416 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
RaraP11416 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
RaraP11416 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RaraP11416 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
RaraP11416 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RaraP11416 Gm9207-201ENSMUST00000198773 1115 ntBASIC20.86■□□□□ 0.93
RaraP11416 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RaraP11416 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RaraP11416 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
RaraP11416 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RaraP11416 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RaraP11416 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
RaraP11416 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RaraP11416 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RaraP11416 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms