Protein–RNA interactions for Protein: Q9CWM4

Pfdn1, Prefoldin subunit 1, mousemouse

Predictions only

Length 122 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pfdn1Q9CWM4 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Pfdn1Q9CWM4 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Pfdn1Q9CWM4 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Pfdn1Q9CWM4 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Pfdn1Q9CWM4 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Pfdn1Q9CWM4 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Pfdn1Q9CWM4 Gm45141-201ENSMUST00000206502 1888 ntBASIC17.16■□□□□ 0.34
Pfdn1Q9CWM4 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Pfdn1Q9CWM4 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Pfdn1Q9CWM4 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Pfdn1Q9CWM4 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Pfdn1Q9CWM4 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Pfdn1Q9CWM4 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Pfdn1Q9CWM4 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Pfdn1Q9CWM4 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Pfdn1Q9CWM4 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Pfdn1Q9CWM4 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Pfdn1Q9CWM4 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Pfdn1Q9CWM4 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Pfdn1Q9CWM4 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Pfdn1Q9CWM4 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Pfdn1Q9CWM4 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Pfdn1Q9CWM4 AC122428.2-201ENSMUST00000216321 1832 ntBASIC17.15■□□□□ 0.34
Pfdn1Q9CWM4 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC17.15■□□□□ 0.34
Pfdn1Q9CWM4 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Pfdn1Q9CWM4 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Pfdn1Q9CWM4 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Pfdn1Q9CWM4 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Pfdn1Q9CWM4 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Pfdn1Q9CWM4 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC17.15■□□□□ 0.34
Pfdn1Q9CWM4 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
Pfdn1Q9CWM4 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.34
Pfdn1Q9CWM4 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Pfdn1Q9CWM4 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Pfdn1Q9CWM4 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Pfdn1Q9CWM4 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Pfdn1Q9CWM4 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Pfdn1Q9CWM4 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Pfdn1Q9CWM4 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Pfdn1Q9CWM4 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Pfdn1Q9CWM4 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Pfdn1Q9CWM4 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Pfdn1Q9CWM4 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Pfdn1Q9CWM4 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Pfdn1Q9CWM4 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Pfdn1Q9CWM4 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Pfdn1Q9CWM4 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC17.13■□□□□ 0.33
Pfdn1Q9CWM4 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Pfdn1Q9CWM4 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Pfdn1Q9CWM4 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC17.13■□□□□ 0.33
Pfdn1Q9CWM4 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Pfdn1Q9CWM4 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Pfdn1Q9CWM4 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Pfdn1Q9CWM4 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Pfdn1Q9CWM4 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Pfdn1Q9CWM4 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Pfdn1Q9CWM4 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Pfdn1Q9CWM4 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Pfdn1Q9CWM4 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Pfdn1Q9CWM4 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Pfdn1Q9CWM4 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Pfdn1Q9CWM4 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC17.12■□□□□ 0.33
Pfdn1Q9CWM4 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Pfdn1Q9CWM4 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Pfdn1Q9CWM4 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Pfdn1Q9CWM4 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC17.11■□□□□ 0.33
Pfdn1Q9CWM4 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Pfdn1Q9CWM4 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Pfdn1Q9CWM4 AC158990.1-201ENSMUST00000221450 2016 ntBASIC17.11■□□□□ 0.33
Pfdn1Q9CWM4 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Pfdn1Q9CWM4 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Pfdn1Q9CWM4 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Pfdn1Q9CWM4 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Pfdn1Q9CWM4 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC17.11■□□□□ 0.33
Pfdn1Q9CWM4 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Pfdn1Q9CWM4 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Pfdn1Q9CWM4 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Pfdn1Q9CWM4 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Pfdn1Q9CWM4 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Pfdn1Q9CWM4 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Pfdn1Q9CWM4 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Pfdn1Q9CWM4 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Pfdn1Q9CWM4 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Pfdn1Q9CWM4 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Pfdn1Q9CWM4 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC17.1■□□□□ 0.33
Pfdn1Q9CWM4 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Pfdn1Q9CWM4 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Pfdn1Q9CWM4 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC17.1■□□□□ 0.33
Pfdn1Q9CWM4 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Pfdn1Q9CWM4 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Pfdn1Q9CWM4 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Pfdn1Q9CWM4 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Pfdn1Q9CWM4 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Pfdn1Q9CWM4 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Pfdn1Q9CWM4 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Pfdn1Q9CWM4 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Pfdn1Q9CWM4 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Pfdn1Q9CWM4 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Pfdn1Q9CWM4 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Pfdn1Q9CWM4 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms