Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Smc1aQ9CU62 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
Smc1aQ9CU62 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Smc1aQ9CU62 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC21.61■■□□□ 1.05
Smc1aQ9CU62 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
Smc1aQ9CU62 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Smc1aQ9CU62 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Smc1aQ9CU62 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Smc1aQ9CU62 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Smc1aQ9CU62 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
Smc1aQ9CU62 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Smc1aQ9CU62 Gm12251-201ENSMUST00000117893 792 ntBASIC21.6■■□□□ 1.05
Smc1aQ9CU62 AC164629.5-201ENSMUST00000220387 632 ntBASIC21.6■■□□□ 1.05
Smc1aQ9CU62 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Smc1aQ9CU62 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Smc1aQ9CU62 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
Smc1aQ9CU62 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Smc1aQ9CU62 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Smc1aQ9CU62 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Smc1aQ9CU62 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Smc1aQ9CU62 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Smc1aQ9CU62 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Smc1aQ9CU62 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Smc1aQ9CU62 Gm7160-202ENSMUST00000188519 1027 ntBASIC21.59■■□□□ 1.05
Smc1aQ9CU62 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC21.59■■□□□ 1.05
Smc1aQ9CU62 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Smc1aQ9CU62 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Smc1aQ9CU62 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Smc1aQ9CU62 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Smc1aQ9CU62 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Smc1aQ9CU62 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Smc1aQ9CU62 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Smc1aQ9CU62 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Smc1aQ9CU62 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC21.58■■□□□ 1.05
Smc1aQ9CU62 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Smc1aQ9CU62 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
Smc1aQ9CU62 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC21.58■■□□□ 1.05
Smc1aQ9CU62 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
Smc1aQ9CU62 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC21.58■■□□□ 1.04
Smc1aQ9CU62 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Smc1aQ9CU62 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Smc1aQ9CU62 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
Smc1aQ9CU62 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
Smc1aQ9CU62 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC21.57■■□□□ 1.04
Smc1aQ9CU62 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC21.57■■□□□ 1.04
Smc1aQ9CU62 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Smc1aQ9CU62 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Smc1aQ9CU62 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Smc1aQ9CU62 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Smc1aQ9CU62 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Smc1aQ9CU62 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Smc1aQ9CU62 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Smc1aQ9CU62 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Smc1aQ9CU62 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Smc1aQ9CU62 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Smc1aQ9CU62 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
Smc1aQ9CU62 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Smc1aQ9CU62 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
Smc1aQ9CU62 AC166356.1-201ENSMUST00000228236 1426 ntBASIC21.55■■□□□ 1.04
Smc1aQ9CU62 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Smc1aQ9CU62 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC21.55■■□□□ 1.04
Smc1aQ9CU62 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
Smc1aQ9CU62 Gm43530-201ENSMUST00000195920 274 ntBASIC21.55■■□□□ 1.04
Smc1aQ9CU62 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Smc1aQ9CU62 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
Smc1aQ9CU62 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Smc1aQ9CU62 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Smc1aQ9CU62 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Smc1aQ9CU62 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
Smc1aQ9CU62 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Smc1aQ9CU62 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Smc1aQ9CU62 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Smc1aQ9CU62 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Smc1aQ9CU62 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Smc1aQ9CU62 Cdc34b-202ENSMUST00000188741 1252 ntBASIC21.54■■□□□ 1.04
Smc1aQ9CU62 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Smc1aQ9CU62 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
Smc1aQ9CU62 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Smc1aQ9CU62 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Smc1aQ9CU62 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Smc1aQ9CU62 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Smc1aQ9CU62 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Smc1aQ9CU62 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Smc1aQ9CU62 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Smc1aQ9CU62 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC21.53■■□□□ 1.04
Smc1aQ9CU62 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Smc1aQ9CU62 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Smc1aQ9CU62 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Smc1aQ9CU62 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC21.53■■□□□ 1.04
Smc1aQ9CU62 Gm26833-201ENSMUST00000180899 440 ntBASIC21.53■■□□□ 1.04
Smc1aQ9CU62 Gm29257-201ENSMUST00000186115 639 ntBASIC21.53■■□□□ 1.04
Smc1aQ9CU62 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Smc1aQ9CU62 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Smc1aQ9CU62 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Smc1aQ9CU62 Spcs1-204ENSMUST00000226782 949 ntBASIC21.52■■□□□ 1.04
Smc1aQ9CU62 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
Smc1aQ9CU62 Gm6085-201ENSMUST00000182774 1470 ntBASIC21.52■■□□□ 1.03
Smc1aQ9CU62 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
Smc1aQ9CU62 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Smc1aQ9CU62 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms