Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Clp1Q99LI9 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC20.69■□□□□ 0.9
Clp1Q99LI9 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Clp1Q99LI9 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC20.69■□□□□ 0.9
Clp1Q99LI9 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Clp1Q99LI9 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Clp1Q99LI9 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Clp1Q99LI9 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Clp1Q99LI9 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
Clp1Q99LI9 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Clp1Q99LI9 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC20.68■□□□□ 0.9
Clp1Q99LI9 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.68■□□□□ 0.9
Clp1Q99LI9 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC20.68■□□□□ 0.9
Clp1Q99LI9 Gm26524-201ENSMUST00000192339 390 ntBASIC20.67■□□□□ 0.9
Clp1Q99LI9 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Clp1Q99LI9 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Clp1Q99LI9 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Clp1Q99LI9 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Clp1Q99LI9 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Clp1Q99LI9 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC20.67■□□□□ 0.9
Clp1Q99LI9 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Clp1Q99LI9 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
Clp1Q99LI9 AA386476-201ENSMUST00000098781 1665 ntBASIC20.67■□□□□ 0.9
Clp1Q99LI9 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC20.67■□□□□ 0.9
Clp1Q99LI9 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Clp1Q99LI9 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Clp1Q99LI9 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Clp1Q99LI9 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC20.66■□□□□ 0.9
Clp1Q99LI9 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Clp1Q99LI9 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Clp1Q99LI9 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Clp1Q99LI9 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Clp1Q99LI9 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Clp1Q99LI9 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Clp1Q99LI9 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Clp1Q99LI9 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Clp1Q99LI9 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC20.65■□□□□ 0.9
Clp1Q99LI9 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
Clp1Q99LI9 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC20.65■□□□□ 0.9
Clp1Q99LI9 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC20.65■□□□□ 0.9
Clp1Q99LI9 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Clp1Q99LI9 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Clp1Q99LI9 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Clp1Q99LI9 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Clp1Q99LI9 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Clp1Q99LI9 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Clp1Q99LI9 Gm17641-201ENSMUST00000166328 2350 ntBASIC20.64■□□□□ 0.89
Clp1Q99LI9 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Clp1Q99LI9 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Clp1Q99LI9 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Clp1Q99LI9 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Clp1Q99LI9 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Clp1Q99LI9 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Clp1Q99LI9 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Clp1Q99LI9 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Clp1Q99LI9 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Clp1Q99LI9 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Clp1Q99LI9 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Clp1Q99LI9 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Clp1Q99LI9 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
Clp1Q99LI9 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC20.63■□□□□ 0.89
Clp1Q99LI9 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Clp1Q99LI9 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Clp1Q99LI9 Trmt13-210ENSMUST00000198454 880 ntBASIC20.63■□□□□ 0.89
Clp1Q99LI9 Gm44878-201ENSMUST00000205812 1295 ntBASIC20.63■□□□□ 0.89
Clp1Q99LI9 Gm10812-201ENSMUST00000099864 546 ntBASIC20.63■□□□□ 0.89
Clp1Q99LI9 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Clp1Q99LI9 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Clp1Q99LI9 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Clp1Q99LI9 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Clp1Q99LI9 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Clp1Q99LI9 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC20.62■□□□□ 0.89
Clp1Q99LI9 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Clp1Q99LI9 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC20.62■□□□□ 0.89
Clp1Q99LI9 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Clp1Q99LI9 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Clp1Q99LI9 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC20.62■□□□□ 0.89
Clp1Q99LI9 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Clp1Q99LI9 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Clp1Q99LI9 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Clp1Q99LI9 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Clp1Q99LI9 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Clp1Q99LI9 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC20.61■□□□□ 0.89
Clp1Q99LI9 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Clp1Q99LI9 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Clp1Q99LI9 Gm43909-201ENSMUST00000203443 1876 ntBASIC20.61■□□□□ 0.89
Clp1Q99LI9 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Clp1Q99LI9 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC20.61■□□□□ 0.89
Clp1Q99LI9 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC20.61■□□□□ 0.89
Clp1Q99LI9 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Clp1Q99LI9 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Clp1Q99LI9 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Clp1Q99LI9 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clp1Q99LI9 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clp1Q99LI9 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clp1Q99LI9 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Clp1Q99LI9 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clp1Q99LI9 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clp1Q99LI9 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clp1Q99LI9 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC20.6■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms