Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
Usp47Q8BY87 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
Usp47Q8BY87 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
Usp47Q8BY87 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC27.7■■■□□ 2.03
Usp47Q8BY87 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC27.7■■■□□ 2.02
Usp47Q8BY87 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC27.7■■■□□ 2.02
Usp47Q8BY87 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
Usp47Q8BY87 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
Usp47Q8BY87 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC27.7■■■□□ 2.02
Usp47Q8BY87 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
Usp47Q8BY87 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC27.69■■■□□ 2.02
Usp47Q8BY87 Gm27405-201ENSMUST00000184201 112 ntBASIC27.69■■■□□ 2.02
Usp47Q8BY87 Gm7291-201ENSMUST00000199147 382 ntBASIC27.69■■■□□ 2.02
Usp47Q8BY87 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
Usp47Q8BY87 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC27.69■■■□□ 2.02
Usp47Q8BY87 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC27.68■■■□□ 2.02
Usp47Q8BY87 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC27.68■■■□□ 2.02
Usp47Q8BY87 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
Usp47Q8BY87 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
Usp47Q8BY87 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
Usp47Q8BY87 Gm38205-201ENSMUST00000192243 258 ntBASIC27.68■■■□□ 2.02
Usp47Q8BY87 CT010467.1-202ENSMUST00000205406 714 ntBASIC27.68■■■□□ 2.02
Usp47Q8BY87 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC27.68■■■□□ 2.02
Usp47Q8BY87 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
Usp47Q8BY87 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC27.68■■■□□ 2.02
Usp47Q8BY87 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
Usp47Q8BY87 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
Usp47Q8BY87 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC27.67■■■□□ 2.02
Usp47Q8BY87 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
Usp47Q8BY87 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC27.67■■■□□ 2.02
Usp47Q8BY87 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
Usp47Q8BY87 Gm42778-201ENSMUST00000199644 553 ntBASIC27.67■■■□□ 2.02
Usp47Q8BY87 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
Usp47Q8BY87 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
Usp47Q8BY87 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC27.67■■■□□ 2.02
Usp47Q8BY87 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
Usp47Q8BY87 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC27.67■■■□□ 2.02
Usp47Q8BY87 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC27.67■■■□□ 2.02
Usp47Q8BY87 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
Usp47Q8BY87 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
Usp47Q8BY87 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC27.66■■■□□ 2.02
Usp47Q8BY87 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC27.66■■■□□ 2.02
Usp47Q8BY87 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC27.66■■■□□ 2.02
Usp47Q8BY87 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
Usp47Q8BY87 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
Usp47Q8BY87 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
Usp47Q8BY87 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
Usp47Q8BY87 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
Usp47Q8BY87 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC27.65■■■□□ 2.02
Usp47Q8BY87 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC27.65■■■□□ 2.02
Usp47Q8BY87 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC27.65■■■□□ 2.02
Usp47Q8BY87 Gm34220-201ENSMUST00000223001 2709 ntBASIC27.65■■■□□ 2.02
Usp47Q8BY87 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC27.65■■■□□ 2.02
Usp47Q8BY87 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
Usp47Q8BY87 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC27.65■■■□□ 2.02
Usp47Q8BY87 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
Usp47Q8BY87 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
Usp47Q8BY87 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC27.65■■■□□ 2.02
Usp47Q8BY87 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
Usp47Q8BY87 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC27.64■■■□□ 2.02
Usp47Q8BY87 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC27.64■■■□□ 2.02
Usp47Q8BY87 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC27.64■■■□□ 2.02
Usp47Q8BY87 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC27.64■■■□□ 2.02
Usp47Q8BY87 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC27.64■■■□□ 2.02
Usp47Q8BY87 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC27.64■■■□□ 2.02
Usp47Q8BY87 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC27.64■■■□□ 2.02
Usp47Q8BY87 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
Usp47Q8BY87 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC27.64■■■□□ 2.02
Usp47Q8BY87 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
Usp47Q8BY87 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
Usp47Q8BY87 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
Usp47Q8BY87 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC27.62■■■□□ 2.01
Usp47Q8BY87 Gm13146-201ENSMUST00000118508 780 ntBASIC27.62■■■□□ 2.01
Usp47Q8BY87 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
Usp47Q8BY87 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
Usp47Q8BY87 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
Usp47Q8BY87 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC27.62■■■□□ 2.01
Usp47Q8BY87 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
Usp47Q8BY87 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC27.61■■■□□ 2.01
Usp47Q8BY87 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC27.61■■■□□ 2.01
Usp47Q8BY87 Ap3s1-204ENSMUST00000225520 957 ntBASIC27.61■■■□□ 2.01
Usp47Q8BY87 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC27.61■■■□□ 2.01
Usp47Q8BY87 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
Usp47Q8BY87 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC27.61■■■□□ 2.01
Usp47Q8BY87 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
Usp47Q8BY87 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC27.6■■■□□ 2.01
Usp47Q8BY87 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
Usp47Q8BY87 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC27.6■■■□□ 2.01
Usp47Q8BY87 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC27.6■■■□□ 2.01
Usp47Q8BY87 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
Usp47Q8BY87 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
Usp47Q8BY87 Gm32699-201ENSMUST00000221728 1988 ntBASIC27.6■■■□□ 2.01
Usp47Q8BY87 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
Usp47Q8BY87 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC27.6■■■□□ 2.01
Usp47Q8BY87 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC27.6■■■□□ 2.01
Usp47Q8BY87 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
Usp47Q8BY87 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
Usp47Q8BY87 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
Usp47Q8BY87 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
Usp47Q8BY87 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms